Factsheet for PGSC0003DMT400002569

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, plasma membrane

Predictor Summary:

plastid 3
cytosol 1
peroxisome 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g006290.1.1	Tomato	plasma membrane	93.75	85.55
VIT_13s0067g01830.t01	Wine grape	plastid	54.58	58.48
VIT_13s0067g01730.t01	Wine grape	extracellular, vacuole	42.5	55.14
PGSC0003DMT400002570	Potato	endoplasmic reticulum, plasma membrane	58.75	53.01
KRH70289	Soybean	endoplasmic reticulum, plasma membrane	58.33	52.63
KRH70288	Soybean	mitochondrion	56.67	51.13
PGSC0003DMT400002567	Potato	endoplasmic reticulum, extracellular	56.25	49.45
AT5G16010.1	Thale cress	plasma membrane	52.08	46.64
Bra006336.1-P	Field mustard	plastid	50.83	45.02
CDX78668	Canola	plastid	50.83	45.02
CDX70668	Canola	plasma membrane	50.83	45.02
Bra008657.1-P	Field mustard	plastid	51.25	44.89
CDX69482	Canola	plastid	50.83	44.69
Bra023548.1-P	Field mustard	plastid	50.83	44.53
CDY26484	Canola	plastid	50.42	44.49
CDX85520	Canola	plasma membrane, plastid	50.83	44.2
Zm00001d018846_P001	Maize	peroxisome, plastid, vacuole	46.25	43.87
CDY38137	Canola	endoplasmic reticulum, nucleus, plasma membrane, plastid	50.83	43.26
HORVU1Hr1G013970.1	Barley	endoplasmic reticulum	49.17	42.6
TraesCS2A01G113600.1	Wheat	endoplasmic reticulum, vacuole	47.92	42.28
Os07t0162100-00	Rice	endoplasmic reticulum	48.33	41.88
TraesCS2D01G249800.1	Wheat	plastid	42.5	40.8
EER98015	Sorghum	endoplasmic reticulum, plasma membrane	47.08	39.51
Zm00001d007910_P001	Maize	plasma membrane	45.0	38.16
Zm00001d018847_P001	Maize	endoplasmic reticulum, vacuole	43.33	37.68
TraesCS2D01G114200.1	Wheat	plastid	47.08	35.09
TraesCS2B01G269300.1	Wheat	mitochondrion	40.42	33.56
PGSC0003DMT400049423	Potato	endoplasmic reticulum, plastid	22.5	22.59
PGSC0003DMT400052432	Potato	endoplasmic reticulum, plasma membrane	24.17	22.39

Protein Annotations

InterPro:3-oxo-5_a-steroid_4-DH_C	MapMan:50.1.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0016627	GO:GO:0055114	InterPro:IPR001104	UniProt:M0ZKB2	PFAM:PF02544
EnsemblPlantsGene:PGSC0003DMG400000985	PGSC:PGSC0003DMG400000985	EnsemblPlants:PGSC0003DMT400002569	PFscan:PS50244	PANTHER:PTHR10556	PANTHER:PTHR10556:SF35
TMHMM:TMhelix	UniParc:UPI000295C8FC	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400000985]

Coordinates

chr11:+:6340483..6341967

Molecular Weight (calculated)

27674.2 Da

IEP (calculated)

10.141

GRAVY (calculated)

0.425

Length

240 amino acids

Sequence
(BLAST)

001: MNLIFSAILG YSEGSSKQNL EYSKFWNLKS QEKAKIPSKI GMIIAYTPTL ITCLSFFWIF PNGGIRFFML NFAITIHLFK RLLEVLFVHK YSGSMAMNSA
101: ITISSSYFIA FSSLIYIQHL TKGSTEPIID LKYFGFIVFL VGIIGNFYHH FILSKMRKKG ESGYKIPKDG LFNLVICPHY LFEIVTFFGF SLISQTLFSF
201: SSTIGTLFYL MGRSYATRKW YLSKFEDFPR NVKALIPFVF

Best Arabidopsis Sequence Match ( AT5G16010.1 )
(BLAST)

001: MEMVTSFVYP PPPSILLNCM SVVGVAALAN IGWSEIRGNH LKYSKFGVSS SSPQPQKERF GSISSRNGML LLYTPAFLAA ASSFFVVPSD DLRFLLLKSA
101: LALHFFKRVF EVLFIHKYSG GMAIDSALTI SSSYFSSTAL MLYSQNLTLG LTEPSFDMKL AGVVMFVVGI VGNLYHHVLL AKLRKEDGKK EYKIPKGGLF
201: DIIICPHYLF EILVFWSFFL ISQTIYSFSF AMGTMLYLIG RSYATRTWYL SKFDDFPKHI KALIPFVF

Arabidopsis Description

3-oxo-5-alpha-steroid 4-dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LFS3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.