Factsheet for VIT_15s0046g03730.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g00030.t01	Wine grape	cytosol	61.16	95.0
VIT_07s0141g01080.t01	Wine grape	cytosol	19.74	82.14
KRH00685	Soybean	cytosol	75.75	76.24
KRH40509	Soybean	cytosol	74.89	75.38
KRH15982	Soybean	cytosol	18.03	71.79
PGSC0003DMT400000445	Potato	endoplasmic reticulum	68.88	69.48
GSMUA_AchrUn_...	Banana	cytosol	70.17	69.28
PGSC0003DMT400026609	Potato	cytosol	68.45	69.2
GSMUA_Achr8P02460_001	Banana	cytosol, nucleus	4.29	68.97
Solyc10g017580.2.1	Tomato	cytosol	67.81	68.55
AT4G00550.1	Thale cress	cytosol	69.53	68.5
CDY07210	Canola	mitochondrion	69.1	67.65
Solyc01g094170.2.1	Tomato	cytosol	60.94	67.46
CDY51152	Canola	mitochondrion, plastid	69.1	67.08
Bra037346.1-P	Field mustard	mitochondrion, plastid	68.67	66.53
GSMUA_Achr10P...	Banana	cytosol	66.95	66.38
EER92494	Sorghum	golgi	65.67	65.95
GSMUA_Achr9P03500_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	66.09	65.67
Os03t0268300-01	Rice	golgi	65.02	65.44
Zm00001d028211_P002	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	66.52	65.26
EER92641	Sorghum	golgi	66.09	64.84
Os03t0214400-01	Rice	plasma membrane	65.02	63.66
Zm00001d028571_P001	Maize	golgi	64.81	63.58
TraesCS4B01G246700.1	Wheat	mitochondrion	63.3	61.97
TraesCS4D01G211200.1	Wheat	mitochondrion	66.31	61.92
TraesCS4D01G246000.1	Wheat	mitochondrion	63.09	61.76
HORVU4Hr1G067920.1	Barley	mitochondrion	63.09	61.76
TraesCS4A01G093900.1	Wheat	mitochondrion	66.09	61.72
HORVU4Hr1G060440.2	Barley	mitochondrion	66.09	61.6
TraesCS4B01G210400.1	Wheat	mitochondrion	65.88	61.52
TraesCS4A01G058200.1	Wheat	cytosol	63.95	58.32
GSMUA_Achr8P02450_001	Banana	cytosol	19.31	55.56
VIT_08s0105g00260.t01	Wine grape	cytosol	56.22	32.87

Protein Annotations

EntrezGene:100246025	wikigene:100246025	EntrezGene:100251641	wikigene:100251641	Gene3D:3.40.50.2000	MapMan:5.3.3
EMBL:AM443874	ProteinID:CAN80695	ProteinID:CAN80695.1	ProteinID:CBI40285	ProteinID:CBI40285.3	UniProt:D7UC20
EMBL:FN596755	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009536
GO:GO:0009707	GO:GO:0009987	GO:GO:0016020	GO:GO:0016740	GO:GO:0019375	GO:GO:0035250
InterPro:Glyco_trans_1	EntrezGene:LOC100246025	wikigene:LOC100246025	EntrezGene:LOC100251641	wikigene:LOC100251641	PFAM:PF00534
PANTHER:PTHR12526	PANTHER:PTHR12526:SF460	SUPFAM:SSF53756	UniParc:UPI00015CA4D7	ArrayExpress:VIT_15s0046g03730	EnsemblPlantsGene:VIT_15s0046g03730
EnsemblPlants:VIT_15s0046g03730.t01	unigene:Vvi.2419	RefSeq:XP_002266316	RefSeq:XP_002266316.1	RefSeq:XP_002276164	RefSeq:XP_002276164.2
RefSeq:XP_010661722.1	RefSeq:XP_010661723.1	:	:	:	:

Description

No Description!

Coordinates

chr15:+:20263859..20268666

Molecular Weight (calculated)

53101.3 Da

IEP (calculated)

7.309

GRAVY (calculated)

-0.436

Length

466 amino acids

Sequence
(BLAST)

001: MDSKQHIAIF TTASLPWMTG TAVNPLFRVA YLTKGREFKV TLVIPWLSLK DQELVYPNKI TFKSPSEQEA YVRQWLGERT GFVCDFSIKF YPGKFSRDKR
101: SILVVGDITE IIPDEEADIA VLEEPEHLTW YHHGKRWKTK FHLVLGIVHT NYLEYVRREK NGRLQAFLLK YINNWVVDIY CHKVIRLSAA TQDLPRSIIC
201: NVHGVNPKFL EIGKRKNEHQ QNGDRAFTKG AYYIGKMVWS KGYKELLKLL HDNQKELTGL EVDLYGNGED SDQVQGAAKK LELDVRVYPG HDHADPLFHD
301: YKVFLNPSTT DVLCTTTAEA LAMGKIVVCA NHPSNDFFKQ FTNCRTYQDS SGFVKETLKA LSEEPAQLTD AQMHELSWDA ATERFLQAAG LDHVVERKPT
401: DTPPKKFMSM TMNLRKNMDD ASAYVHHVAS GIEASRRVFG AIPGSLQPDE EQRQELGWAF PTGGQG

Best Arabidopsis Sequence Match ( AT4G00550.2 )
(BLAST)

001: MTNQQEQHIA IFTTASIPWL TGTAVNPLFR AAYLANDGER RVTLVIPWLT LKHQKLVYPN SITFSSPSEQ EAYVRQWLEE RVSFRLAFEI RFYPGKFAID
101: KRSILPVGDI SDAIPDEEAD IAVLEEPEHL TWFHHGQKWK TKFNYVIGIV HTNYLEYVKR EKQGRVKAFF LKYLNSWVVG IYCHKVIRLS AATQEYPKSI
201: VCNVHGVNPK FLEIGLRKLE QQKLQEQPFT KGAYYIGKMV WSKGYKELLK LLEKHQKELA ELEVDLYGDG EDSEEIKEAA RKLDLTVNVY PGRDHADSLF
301: HNYKVFLNPS TTDVVCTTTA EALAMGKIVV CANHISNKFF KQFPNCRTYD DGQGFVRATL KALGEQPSQL TEQQRHELSW EAATQRFIKV SDLNRLSRAD
401: SNLSKRSVFA SSSISVGKNL EDMSAYIHFL ASGFEASRTA FGAIPGSLQP DEELCRDLGL SLNTPSPNTR KQD

Arabidopsis Description

DGD2Digalactosyldiacylglycerol synthase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W1S1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.