Factsheet for VIT_08s0105g00260.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G192800.1	Wheat	mitochondrion	46.42	80.26
PGSC0003DMT400072559	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	8.03	78.05
KRH75753	Soybean	mitochondrion	15.06	77.92
KRH68005	Soybean	nucleus	75.53	76.88
TraesCSU01G187100.2	Wheat	cytosol	56.09	76.67
KRG96264	Soybean	nucleus	74.53	75.48
TraesCSU01G186800.1	Wheat	plasma membrane	55.83	73.68
PGSC0003DMT400054943	Potato	cytosol	71.52	73.64
Solyc10g081870.1.1	Tomato	cytosol, extracellular, peroxisome	10.66	73.28
PGSC0003DMT400072563	Potato	plastid	72.77	72.5
Solyc10g081900.1.1	Tomato	plastid	72.27	72.18
Solyc01g007100.2.1	Tomato	cytosol, plastid	69.39	71.26
GSMUA_Achr10P...	Banana	cytosol	69.13	69.66
TraesCS4D01G112200.1	Wheat	nucleus	61.86	67.81
Os11t0158400-01	Rice	cytosol	62.61	67.8
KXG27790	Sorghum	nucleus	62.61	67.62
GSMUA_Achr11P...	Banana	cytosol	69.01	67.48
TraesCS4A01G200600.1	Wheat	nucleus	61.36	67.17
AT3G11670.1	Thale cress	plastid	67.88	66.96
CDY08505	Canola	cytosol, plastid	67.0	66.01
CDY01047	Canola	cytosol, plastid	66.62	65.88
Bra034821.1-P	Field mustard	cytosol, plastid	66.75	65.84
Zm00001d053149_P002	Maize	plastid	61.98	64.83
HORVU4Hr1G020770.3	Barley	nucleus	61.48	64.47
VIT_11s0016g00030.t01	Wine grape	cytosol	23.46	62.33
VIT_15s0046g03730.t01	Wine grape	cytosol	32.87	56.22
VIT_07s0141g01080.t01	Wine grape	cytosol	5.02	35.71
KRH49694	Soybean	mitochondrion	23.09	33.89

Protein Annotations

EntrezGene:100259167	wikigene:100259167	Gene3D:3.40.50.2000	MapMan:5.3.3	ProteinID:CCB47916	ProteinID:CCB47916.1
UniProt:F6H6T0	EMBL:FN595245	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009536	GO:GO:0009707	GO:GO:0009987
GO:GO:0016020	GO:GO:0016740	GO:GO:0019375	GO:GO:0035250	GO:GO:0065009	EntrezGene:LOC100259167
wikigene:LOC100259167	PFAM:PF13692	PANTHER:PTHR12526	PANTHER:PTHR12526:SF532	SUPFAM:SSF53756	TIGR:TC52382
TIGR:TC59792	UniParc:UPI0001983CA3	ArrayExpress:VIT_08s0105g00260	EnsemblPlantsGene:VIT_08s0105g00260	EnsemblPlants:VIT_08s0105g00260.t01	unigene:Vvi.8062
RefSeq:XP_002264659	RefSeq:XP_002264659.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:-:7313015..7340090

Molecular Weight (calculated)

90312.1 Da

IEP (calculated)

8.203

GRAVY (calculated)

-0.464

Length

797 amino acids

Sequence
(BLAST)

001: MINIKTETRA TAAPEPVSSA NAFSFLSRGW REVRDSADAD LKLMKNRADS FKNLATSFDR EIENFINSAS AFSVPAIKSS PPAEIDFVKR LQPKISEIRR
101: AYSSPDFSRK VLEKWSPRTR IRIDLSAIKN AIVADAEERD GGLGFRGWER VRRGRGLRLK EFWGEWKEES EEGQKEWEPI RALKTRLQRR SSSSDIFEGF
201: KNSEFVEKVK SSLKAICREP QESKDVPPLD VPELLAYLVR QSGPFLDQLG FKTDICDKIV ESLCSKRKNQ LLLRSLSAGE SSFLESDNTN DELDLRIASV
301: LQSTGHCYEG GFWADSAKHN LSDGKRHVAI VTTASLPWMT GTAVNPLFRA AYLASYAKQN VTLLVPWLCK KDQELVYPNS LTFSSPEEQE VYIRNWLEER
401: VGFKADFKIS FYPGKFSKSR RSIIPAGDTS QFIPSRDADI AILEEPEHLN WYHHGKRWTD KFNHVVGVVH TNYLEYIKRE KNGALQAFFV KHINNWVARA
501: YCHKVLRLSA ATQDLPKSVI CNVHGVNPKF LKIGEKLAEE RELGQRAFSK GAYFLGKMVW AKGYRELIDL LSRHKNDLDG FNLDVFGNGE DAHEVQTAAK
601: RLHLNLNFMK GRDHADDSLH GYKVFINPSV SDVLCTATAE ALAMGKFVIC ADHPSNEFFS SFPNCLTYKT SDDFVAKVKE ALANEPQPLT PEQRYNLSWE
701: AATQRFMEYS DLDRVLNNKD DAQLSKSCGK LITRSVSMPT LSGMVDGGLA FAHYCLTGNE LLRLCTGAIP GTRDYDKQHC RDLHLLPPQV ENPIYGW

Best Arabidopsis Sequence Match ( AT3G11670.1 )
(BLAST)

001: MVKETLIPPS STSMTTGTSS SSSLSMTLSS TNALSFLSKG WREVWDSADA DLQLMRDRAN SVKNLASTFD REIENFLNNS ARSAFPVGSP SASSFSNEIG
101: IMKKLQPKIS EFRRVYSAPE ISRKVMERWG PARAKLGMDL SAIKKAIVSE MELDERQGVL EMSRLRRRRN SDRVRFTEFF AEAERDGEAY FGDWEPIRSL
201: KSRFKEFEKR SSLEILSGFK NSEFVEKLKT SFKSIYKETD EAKDVPPLDV PELLACLVRQ SEPFLDQIGV RKDTCDRIVE SLCKCKSQQL WRLPSAQASD
301: LIENDNHGVD LDMRIASVLQ STGHHYDGGF WTDFVKPETP ENKRHVAIVT TASLPWMTGT AVNPLFRAAY LAKAAKQSVT LVVPWLCESD QELVYPNNLT
401: FSSPEEQESY IRKWLEERIG FKADFKISFY PGKFSKERRS IFPAGDTSQF ISSKDADIAI LEEPEHLNWY YHGKRWTDKF NHVVGIVHTN YLEYIKREKN
501: GALQAFFVNH VNNWVTRAYC DKVLRLSAAT QDLPKSVVCN VHGVNPKFLM IGEKIAEERS RGEQAFSKGA YFLGKMVWAK GYRELIDLMA KHKSELGSFN
601: LDVYGNGEDA VEVQRAAKKH DLNLNFLKGR DHADDALHKY KVFINPSISD VLCTATAEAL AMGKFVVCAD HPSNEFFRSF PNCLTYKTSE DFVSKVQEAM
701: TKEPLPLTPE QMYNLSWEAA TQRFMEYSDL DKILNNGEGG RKMRKSRSVP SFNEVVDGGL AFSHYVLTGN DFLRLCTGAT PRTKDYDNQH CKDLNLVPPH
801: VHKPIFGW

Arabidopsis Description

DGD1DGD1 [Source:UniProtKB/TrEMBL;Acc:A0A178VKL1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.