Factsheet for HORVU4Hr1G020770.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G112200.1	Wheat	nucleus	93.16	97.39
TraesCSU01G192800.1	Wheat	mitochondrion	58.55	96.53
TraesCS4A01G200600.1	Wheat	nucleus	92.24	96.29
TraesCSU01G187100.2	Wheat	cytosol	73.42	95.71
TraesCSU01G186800.1	Wheat	plasma membrane	72.37	91.06
Os11t0158400-01	Rice	cytosol	78.95	81.52
KXG27790	Sorghum	nucleus	78.42	80.76
Zm00001d053149_P002	Maize	plastid	76.71	76.51
KRH75753	Soybean	mitochondrion	15.13	74.68
PGSC0003DMT400072559	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	7.89	73.17
Solyc10g081870.1.1	Tomato	cytosol, extracellular, peroxisome	10.66	69.83
GSMUA_Achr10P...	Banana	cytosol	65.66	63.08
KRH68005	Soybean	nucleus	63.42	61.56
VIT_08s0105g00260.t01	Wine grape	cytosol	64.47	61.48
KRG96264	Soybean	nucleus	63.29	61.12
GSMUA_Achr11P...	Banana	cytosol	65.0	60.61
PGSC0003DMT400054943	Potato	cytosol	61.18	60.08
Solyc01g007100.2.1	Tomato	cytosol, plastid	60.79	59.54
PGSC0003DMT400072563	Potato	plastid	61.32	58.25
Solyc10g081900.1.1	Tomato	plastid	61.05	58.15
CDY08505	Canola	cytosol, plastid	60.13	56.49
Bra034821.1-P	Field mustard	cytosol, plastid	60.0	56.44
AT3G11670.1	Thale cress	plastid	60.0	56.44
CDY01047	Canola	cytosol, plastid	59.47	56.08
HORVU2Hr1G073850.5	Barley	cytosol	57.11	53.51
HORVU4Hr1G067920.1	Barley	mitochondrion	31.71	50.63
HORVU4Hr1G060440.2	Barley	mitochondrion	33.16	50.4
KRH49694	Soybean	mitochondrion	23.16	32.41

Protein Annotations

Gene3D:3.40.50.2000	MapMan:5.3.3	UniProt:A0A287NHP6	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006629	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009536	GO:GO:0009707
GO:GO:0009719	GO:GO:0009809	GO:GO:0009867	GO:GO:0009987	GO:GO:0016020	GO:GO:0016740
GO:GO:0016757	GO:GO:0019375	GO:GO:0019748	GO:GO:0031408	InterPro:Glyco_trans_1	EnsemblPlantsGene:HORVU4Hr1G020770
EnsemblPlants:HORVU4Hr1G020770.3	PFAM:PF00534	PANTHER:PTHR12526	PANTHER:PTHR12526:SF532	SUPFAM:SSF53756	UniParc:UPI000B4625D1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:+:103848337..103853803

Molecular Weight (calculated)

85333.9 Da

IEP (calculated)

6.895

GRAVY (calculated)

-0.427

Length

760 amino acids

Sequence
(BLAST)

001: MASFGVDTRP AAAGEGALSF LSRSLREDLR LIRARAGELE TFLSAPVPEP DLFARLRKAY NTTSSSGSAS GIGKTRLDLS AIGKAFEAEV GRGWGAKTGW
101: RWEDEDAAEW EPIRAVKARL RDLDRKRQDQ ASDVLHKVKL SLKSMSFAPE ASEEVPPLDL NELLAYFLKQ SGPLFDQLGI KRDVCDKLVE SLCSKRKDHF
201: VYDPLSTSES SSFRNDNTCD ELDLRIASVL QSTGHHYEGG FWDDGQKYDV ADKRHVAIVT TASLPWMTGT AVNPLFRAAY LAKSSKQYVT LMVPWLCKSD
301: QELVYPNNMT FSSPEDQESY IRDWLEERVG FKTDFRISFY PGKFQKERRS IIPAGDTSQF IPSKEADIAI LEEPEHLNWY HHGKRWTDKF NHVVGVVHTN
401: YLEYIKREKN GAIQAFFVKH INNLVARAYC HKVLRLSGAT QDVARSMICN VHGVNPKFLE VGERIAAERE SGQQSMSKGA YFLGKMVWAK GYRELIDLLA
501: KHKTDLDGFK LDVYGNGEDS VEVQSAAKKL DLNLNFHKGR DHADDSLHGY KVFVNPSISD VLCTATAEAL AMGKFVVCAD HPSNEFFRSF PNCLTYTTSE
601: DFVAKVKEAM TRDPQPLTPE QRYNLSWEAA TQRFMEHSEL DKVLSSNGDC ASTSGNSVDR KMRKSASLPN MSDIVDGGLA FAHYCFTGSE LLRLSTGAVP
701: GTLNYNKQHS VDMHLLPPQV ELGMSAWYHH SRIRMQHLRT VDLLMADRAV VDAMSPLSTQ

Best Arabidopsis Sequence Match ( AT3G11670.1 )
(BLAST)

001: MVKETLIPPS STSMTTGTSS SSSLSMTLSS TNALSFLSKG WREVWDSADA DLQLMRDRAN SVKNLASTFD REIENFLNNS ARSAFPVGSP SASSFSNEIG
101: IMKKLQPKIS EFRRVYSAPE ISRKVMERWG PARAKLGMDL SAIKKAIVSE MELDERQGVL EMSRLRRRRN SDRVRFTEFF AEAERDGEAY FGDWEPIRSL
201: KSRFKEFEKR SSLEILSGFK NSEFVEKLKT SFKSIYKETD EAKDVPPLDV PELLACLVRQ SEPFLDQIGV RKDTCDRIVE SLCKCKSQQL WRLPSAQASD
301: LIENDNHGVD LDMRIASVLQ STGHHYDGGF WTDFVKPETP ENKRHVAIVT TASLPWMTGT AVNPLFRAAY LAKAAKQSVT LVVPWLCESD QELVYPNNLT
401: FSSPEEQESY IRKWLEERIG FKADFKISFY PGKFSKERRS IFPAGDTSQF ISSKDADIAI LEEPEHLNWY YHGKRWTDKF NHVVGIVHTN YLEYIKREKN
501: GALQAFFVNH VNNWVTRAYC DKVLRLSAAT QDLPKSVVCN VHGVNPKFLM IGEKIAEERS RGEQAFSKGA YFLGKMVWAK GYRELIDLMA KHKSELGSFN
601: LDVYGNGEDA VEVQRAAKKH DLNLNFLKGR DHADDALHKY KVFINPSISD VLCTATAEAL AMGKFVVCAD HPSNEFFRSF PNCLTYKTSE DFVSKVQEAM
701: TKEPLPLTPE QMYNLSWEAA TQRFMEYSDL DKILNNGEGG RKMRKSRSVP SFNEVVDGGL AFSHYVLTGN DFLRLCTGAT PRTKDYDNQH CKDLNLVPPH
801: VHKPIFGW

Arabidopsis Description

DGD1DGD1 [Source:UniProtKB/TrEMBL;Acc:A0A178VKL1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.