Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G192800.1 | Wheat | mitochondrion | 62.86 | 99.13 |
| TraesCS4A01G200600.1 | Wheat | nucleus | 98.35 | 98.21 |
| TraesCSU01G187100.2 | Wheat | cytosol | 78.54 | 97.94 |
| HORVU4Hr1G020770.3 | Barley | nucleus | 97.39 | 93.16 |
| TraesCSU01G186800.1 | Wheat | plasma membrane | 77.3 | 93.05 |
| Os11t0158400-01 | Rice | cytosol | 83.49 | 82.47 |
| KXG27790 | Sorghum | nucleus | 83.36 | 82.11 |
| Zm00001d053149_P002 | Maize | plastid | 81.43 | 77.69 |
| KRH75753 | Soybean | mitochondrion | 15.82 | 74.68 |
| PGSC0003DMT400072559 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 8.39 | 74.39 |
| Solyc10g081870.1.1 | Tomato | cytosol, extracellular, peroxisome | 11.28 | 70.69 |
| GSMUA_Achr10P... | Banana | cytosol | 69.74 | 64.1 |
| KRH68005 | Soybean | nucleus | 66.71 | 61.94 |
| VIT_08s0105g00260.t01 | Wine grape | cytosol | 67.81 | 61.86 |
| KRG96264 | Soybean | nucleus | 66.58 | 61.5 |
| GSMUA_Achr11P... | Banana | cytosol | 68.78 | 61.35 |
| PGSC0003DMT400054943 | Potato | cytosol | 64.37 | 60.47 |
| Solyc01g007100.2.1 | Tomato | cytosol, plastid | 64.1 | 60.05 |
| PGSC0003DMT400072563 | Potato | plastid | 64.51 | 58.62 |
| Solyc10g081900.1.1 | Tomato | plastid | 64.24 | 58.52 |
| CDY08505 | Canola | cytosol, plastid | 63.41 | 56.98 |
| Bra034821.1-P | Field mustard | cytosol, plastid | 63.27 | 56.93 |
| CDY01047 | Canola | cytosol, plastid | 62.72 | 56.58 |
| AT3G11670.1 | Thale cress | plastid | 62.86 | 56.56 |
| TraesCS2D01G295800.2 | Wheat | cytosol | 62.72 | 51.76 |
| TraesCS4D01G246000.1 | Wheat | mitochondrion | 33.15 | 50.63 |
| TraesCS4D01G211200.1 | Wheat | mitochondrion | 34.66 | 50.5 |
| KRH49694 | Soybean | mitochondrion | 23.8 | 31.86 |
Protein Annotations
| Gene3D:3.40.50.2000 | MapMan:5.3.3 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006629 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009536 | GO:GO:0009707 | GO:GO:0009719 |
| GO:GO:0009809 | GO:GO:0009867 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016740 | GO:GO:0016757 |
| GO:GO:0019375 | GO:GO:0019748 | GO:GO:0031408 | InterPro:Glyco_trans_1 | PFAM:PF00534 | PANTHER:PTHR12526 |
| PANTHER:PTHR12526:SF532 | SUPFAM:SSF53756 | EnsemblPlantsGene:TraesCS4D01G112200 | EnsemblPlants:TraesCS4D01G112200.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr4D:-:93335634..93340856
Molecular Weight (calculated)
81626.3 Da
IEP (calculated)
6.821
GRAVY (calculated)
-0.443
Length
727 amino acids
Sequence
(BLAST)
(BLAST)
001: MASFGVDTRP AAAGEGALSF LSRSLREDLR LIRARAGELE TFLSAPVPEP DLFARLRRAY NTTSSSSAAS GIGRTRLDLS AIGKAFEAEV GRGWGAKTGW
101: RWEDEDAAEW EPIRAVKARL RDLDRKRQDQ ASDVLHKVKL SLKSMSFAPE ASEEVPPLDL NELLAYFLKQ SGPLFDQLGI KRDVCDKLVE SLCSKRKDHF
201: AYDPLSTSES SSFRNDNTCD ELDLRIASVL QSTGHHYEGG FWDDGQKYDV ADKRHVAIVT TASLPWMTGT AVNPLFRAAY LAKSSKQYVT LMVPWLCKSD
301: QELVYPNNMT FSSPEDQETY IRNWLEERVG FKTDFRISFY PGKFQKERRS IIPAGDTSQF IPSKEADIAI LEEPEHLNWY HHGKRWTDKF NHVVGVVHTN
401: YLEYIKREKN GAIQAFFVKH INNLVARAYC HKVLRLSGAT QDLARSMICN VHGVNPKFLE VGERIAAERE SGEQSMSKGA YFLGKMVWAK GYRELIDLLA
501: KHKTDLDGFK LDVYGNGEDS VEVQSAAKKL DLNLNFHKGR DHADDSLHGY KVFVNPSISD VLCTATAEAL AMGKFVVCAD HPSNDFFRSF PNCLVYTTSE
601: DFVAKVKEAM TRDPQPLTPE QRYNLSWEAA TQRFMEHSEL DKVLSSNGDC ASTSGNSVDR RMKKSASLPN MSDIVDGGLA FAHYCFTGSE LLRLSTGAVP
701: GTLNYNKQHS VDMHLLPPQV QNPVYGW
101: RWEDEDAAEW EPIRAVKARL RDLDRKRQDQ ASDVLHKVKL SLKSMSFAPE ASEEVPPLDL NELLAYFLKQ SGPLFDQLGI KRDVCDKLVE SLCSKRKDHF
201: AYDPLSTSES SSFRNDNTCD ELDLRIASVL QSTGHHYEGG FWDDGQKYDV ADKRHVAIVT TASLPWMTGT AVNPLFRAAY LAKSSKQYVT LMVPWLCKSD
301: QELVYPNNMT FSSPEDQETY IRNWLEERVG FKTDFRISFY PGKFQKERRS IIPAGDTSQF IPSKEADIAI LEEPEHLNWY HHGKRWTDKF NHVVGVVHTN
401: YLEYIKREKN GAIQAFFVKH INNLVARAYC HKVLRLSGAT QDLARSMICN VHGVNPKFLE VGERIAAERE SGEQSMSKGA YFLGKMVWAK GYRELIDLLA
501: KHKTDLDGFK LDVYGNGEDS VEVQSAAKKL DLNLNFHKGR DHADDSLHGY KVFVNPSISD VLCTATAEAL AMGKFVVCAD HPSNDFFRSF PNCLVYTTSE
601: DFVAKVKEAM TRDPQPLTPE QRYNLSWEAA TQRFMEHSEL DKVLSSNGDC ASTSGNSVDR RMKKSASLPN MSDIVDGGLA FAHYCFTGSE LLRLSTGAVP
701: GTLNYNKQHS VDMHLLPPQV QNPVYGW
001: MVKETLIPPS STSMTTGTSS SSSLSMTLSS TNALSFLSKG WREVWDSADA DLQLMRDRAN SVKNLASTFD REIENFLNNS ARSAFPVGSP SASSFSNEIG
101: IMKKLQPKIS EFRRVYSAPE ISRKVMERWG PARAKLGMDL SAIKKAIVSE MELDERQGVL EMSRLRRRRN SDRVRFTEFF AEAERDGEAY FGDWEPIRSL
201: KSRFKEFEKR SSLEILSGFK NSEFVEKLKT SFKSIYKETD EAKDVPPLDV PELLACLVRQ SEPFLDQIGV RKDTCDRIVE SLCKCKSQQL WRLPSAQASD
301: LIENDNHGVD LDMRIASVLQ STGHHYDGGF WTDFVKPETP ENKRHVAIVT TASLPWMTGT AVNPLFRAAY LAKAAKQSVT LVVPWLCESD QELVYPNNLT
401: FSSPEEQESY IRKWLEERIG FKADFKISFY PGKFSKERRS IFPAGDTSQF ISSKDADIAI LEEPEHLNWY YHGKRWTDKF NHVVGIVHTN YLEYIKREKN
501: GALQAFFVNH VNNWVTRAYC DKVLRLSAAT QDLPKSVVCN VHGVNPKFLM IGEKIAEERS RGEQAFSKGA YFLGKMVWAK GYRELIDLMA KHKSELGSFN
601: LDVYGNGEDA VEVQRAAKKH DLNLNFLKGR DHADDALHKY KVFINPSISD VLCTATAEAL AMGKFVVCAD HPSNEFFRSF PNCLTYKTSE DFVSKVQEAM
701: TKEPLPLTPE QMYNLSWEAA TQRFMEYSDL DKILNNGEGG RKMRKSRSVP SFNEVVDGGL AFSHYVLTGN DFLRLCTGAT PRTKDYDNQH CKDLNLVPPH
801: VHKPIFGW
101: IMKKLQPKIS EFRRVYSAPE ISRKVMERWG PARAKLGMDL SAIKKAIVSE MELDERQGVL EMSRLRRRRN SDRVRFTEFF AEAERDGEAY FGDWEPIRSL
201: KSRFKEFEKR SSLEILSGFK NSEFVEKLKT SFKSIYKETD EAKDVPPLDV PELLACLVRQ SEPFLDQIGV RKDTCDRIVE SLCKCKSQQL WRLPSAQASD
301: LIENDNHGVD LDMRIASVLQ STGHHYDGGF WTDFVKPETP ENKRHVAIVT TASLPWMTGT AVNPLFRAAY LAKAAKQSVT LVVPWLCESD QELVYPNNLT
401: FSSPEEQESY IRKWLEERIG FKADFKISFY PGKFSKERRS IFPAGDTSQF ISSKDADIAI LEEPEHLNWY YHGKRWTDKF NHVVGIVHTN YLEYIKREKN
501: GALQAFFVNH VNNWVTRAYC DKVLRLSAAT QDLPKSVVCN VHGVNPKFLM IGEKIAEERS RGEQAFSKGA YFLGKMVWAK GYRELIDLMA KHKSELGSFN
601: LDVYGNGEDA VEVQRAAKKH DLNLNFLKGR DHADDALHKY KVFINPSISD VLCTATAEAL AMGKFVVCAD HPSNEFFRSF PNCLTYKTSE DFVSKVQEAM
701: TKEPLPLTPE QMYNLSWEAA TQRFMEYSDL DKILNNGEGG RKMRKSRSVP SFNEVVDGGL AFSHYVLTGN DFLRLCTGAT PRTKDYDNQH CKDLNLVPPH
801: VHKPIFGW
Arabidopsis Description
DGD1DGD1 [Source:UniProtKB/TrEMBL;Acc:A0A178VKL1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.