Factsheet for TraesCS4A01G200600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G192800.1	Wheat	mitochondrion	62.36	98.48
TraesCS4D01G112200.1	Wheat	nucleus	98.21	98.35
TraesCSU01G187100.2	Wheat	cytosol	77.88	97.26
TraesCSU01G186800.1	Wheat	plasma membrane	76.65	92.38
HORVU4Hr1G020770.3	Barley	nucleus	96.29	92.24
Os11t0158400-01	Rice	cytosol	82.83	81.93
KXG27790	Sorghum	nucleus	82.97	81.84
Zm00001d053149_P002	Maize	plastid	80.91	77.3
KRH75753	Soybean	mitochondrion	15.66	74.03
PGSC0003DMT400072559	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	8.24	73.17
Solyc10g081870.1.1	Tomato	cytosol, extracellular, peroxisome	11.13	69.83
GSMUA_Achr10P...	Banana	cytosol	69.09	63.59
KRH68005	Soybean	nucleus	66.07	61.43
VIT_08s0105g00260.t01	Wine grape	cytosol	67.17	61.36
GSMUA_Achr11P...	Banana	cytosol	68.41	61.1
KRG96264	Soybean	nucleus	65.93	60.99
PGSC0003DMT400054943	Potato	cytosol	64.01	60.21
Solyc01g007100.2.1	Tomato	cytosol, plastid	63.46	59.54
TraesCS2A01G297800.1	Wheat	cytosol	61.68	58.85
PGSC0003DMT400072563	Potato	plastid	64.15	58.38
Solyc10g081900.1.1	Tomato	plastid	63.87	58.27
CDY08505	Canola	cytosol, plastid	63.32	56.98
Bra034821.1-P	Field mustard	cytosol, plastid	63.19	56.93
AT3G11670.1	Thale cress	plastid	63.05	56.81
CDY01047	Canola	cytosol, plastid	62.64	56.58
TraesCS4A01G093900.1	Wheat	mitochondrion	34.75	50.7
TraesCS4A01G058200.1	Wheat	cytosol	33.52	47.75
KRH49694	Soybean	mitochondrion	23.63	31.68

Protein Annotations

Gene3D:3.40.50.2000	MapMan:5.3.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006629	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009536	GO:GO:0009707	GO:GO:0009719
GO:GO:0009809	GO:GO:0009867	GO:GO:0009987	GO:GO:0016020	GO:GO:0016740	GO:GO:0016757
GO:GO:0019375	GO:GO:0019748	GO:GO:0031408	InterPro:Glyco_trans_1	PFAM:PF00534	PANTHER:PTHR12526
PANTHER:PTHR12526:SF532	SUPFAM:SSF53756	EnsemblPlantsGene:TraesCS4A01G200600	EnsemblPlants:TraesCS4A01G200600.1	SEG:seg	:

Description

No Description!

Coordinates

chr4A:+:489096748..489109008

Molecular Weight (calculated)

81690.4 Da

IEP (calculated)

6.739

GRAVY (calculated)

-0.425

Length

728 amino acids

Sequence
(BLAST)

001: MASFGVDTRP AAAGEGALSF LSRSLREDLR LIRARAGELE TFLSAPVPEP DLFARLRRAY NTTSSSGSAA SGIGRTCLDL SAIGKAFEAE VGRGWGAKTG
101: WRWEDEDAAE WEPIRAVKAR LRDLDRKRQD QASDVLHKVK LSLKSMSFAP EASEEVPPLD LNELLAYFLK QSVPLFDQLG IKRDVCDKLV ESLCSKRKDH
201: FAYDPLSTSE SSSFRNDNTC DELDLRIASV LQSTGHHYEG GFWDDGQKYD VADKRHVAIV TTASLPWMTG TAVNPLFRAA YLAKSSKQYV TLMVPWLCKS
301: DQELVYPNNM TFSSPEDQET YIRNWLEERV GFKTDFRISF YPGKFQKERR SIIPAGDTSQ FISSKEADIA ILEEPEHLNW YHHGKRWTDK FNHVVGIVHT
401: NYLEYIKREK NGAIQAFFVK HINNLIARAY CHKVLRLSGA TQDLARSMIC NVHGVNPKFL EVGERIAAER ESGEQSMSKG AYFLGKMVWA KGYRELIDLL
501: AKHKTDLDGF KLDVYGNGED SVEVQSAAKK LDLNLNFHKG RDHADDSLHG YKVFVNPSIS DVLCTATAEA LAMGKFVVCA DHPSNDFFRS FPNCLVYTTS
601: EDFVAKVKEA MTRDPQPLTP EQRYNLSWEA ATQRFMEHSE LDKVLSSNGD CASTSGNSVD RRMKKSASLP NMSDIVDGGL AFAHYCFTGS ELLRLSTGAV
701: PGTLNYNKQH SVDMHLLPPQ VQNPVYGW

Best Arabidopsis Sequence Match ( AT3G11670.1 )
(BLAST)

001: MVKETLIPPS STSMTTGTSS SSSLSMTLSS TNALSFLSKG WREVWDSADA DLQLMRDRAN SVKNLASTFD REIENFLNNS ARSAFPVGSP SASSFSNEIG
101: IMKKLQPKIS EFRRVYSAPE ISRKVMERWG PARAKLGMDL SAIKKAIVSE MELDERQGVL EMSRLRRRRN SDRVRFTEFF AEAERDGEAY FGDWEPIRSL
201: KSRFKEFEKR SSLEILSGFK NSEFVEKLKT SFKSIYKETD EAKDVPPLDV PELLACLVRQ SEPFLDQIGV RKDTCDRIVE SLCKCKSQQL WRLPSAQASD
301: LIENDNHGVD LDMRIASVLQ STGHHYDGGF WTDFVKPETP ENKRHVAIVT TASLPWMTGT AVNPLFRAAY LAKAAKQSVT LVVPWLCESD QELVYPNNLT
401: FSSPEEQESY IRKWLEERIG FKADFKISFY PGKFSKERRS IFPAGDTSQF ISSKDADIAI LEEPEHLNWY YHGKRWTDKF NHVVGIVHTN YLEYIKREKN
501: GALQAFFVNH VNNWVTRAYC DKVLRLSAAT QDLPKSVVCN VHGVNPKFLM IGEKIAEERS RGEQAFSKGA YFLGKMVWAK GYRELIDLMA KHKSELGSFN
601: LDVYGNGEDA VEVQRAAKKH DLNLNFLKGR DHADDALHKY KVFINPSISD VLCTATAEAL AMGKFVVCAD HPSNEFFRSF PNCLTYKTSE DFVSKVQEAM
701: TKEPLPLTPE QMYNLSWEAA TQRFMEYSDL DKILNNGEGG RKMRKSRSVP SFNEVVDGGL AFSHYVLTGN DFLRLCTGAT PRTKDYDNQH CKDLNLVPPH
801: VHKPIFGW

Arabidopsis Description

DGD1DGD1 [Source:UniProtKB/TrEMBL;Acc:A0A178VKL1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.