Factsheet for TraesCS4A01G093900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G210400.1	Wheat	mitochondrion	97.19	97.19
TraesCS4D01G211200.1	Wheat	mitochondrion	96.99	96.99
HORVU4Hr1G060440.2	Barley	mitochondrion	93.99	93.8
Os03t0268300-01	Rice	golgi	83.37	89.85
EER92494	Sorghum	golgi	79.76	85.78
Zm00001d028571_P001	Maize	golgi	80.36	84.42
VIT_11s0016g00030.t01	Wine grape	cytosol	42.28	70.33
GSMUA_Achr10P...	Banana	cytosol	65.53	69.57
GSMUA_Achr9P03500_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	62.73	66.74
VIT_15s0046g03730.t01	Wine grape	cytosol	61.72	66.09
GSMUA_Achr8P02450_001	Banana	cytosol	21.44	66.05
GSMUA_Achr8P02460_001	Banana	cytosol, nucleus	3.81	65.52
KRH15982	Soybean	cytosol	15.23	64.96
KRH40509	Soybean	cytosol	60.12	64.79
KRH00685	Soybean	cytosol	59.52	64.15
CDY51152	Canola	mitochondrion, plastid	61.32	63.75
Bra037346.1-P	Field mustard	mitochondrion, plastid	61.32	63.62
CDY07210	Canola	mitochondrion	60.52	63.45
AT4G00550.1	Thale cress	cytosol	60.12	63.42
PGSC0003DMT400000445	Potato	endoplasmic reticulum	56.51	61.04
TraesCS4A01G058200.1	Wheat	cytosol	61.92	60.47
Solyc01g094170.2.1	Tomato	cytosol	50.3	59.62
PGSC0003DMT400026609	Potato	cytosol	54.71	59.22
Solyc10g017580.2.1	Tomato	cytosol	54.51	59.0
VIT_07s0141g01080.t01	Wine grape	cytosol	11.22	50.0
TraesCS4A01G200600.1	Wheat	nucleus	50.7	34.75
TraesCS2A01G297800.1	Wheat	cytosol	53.11	34.73

Protein Annotations

EnsemblPlants:TraesCS4A01G093900.1	EnsemblPlantsGene:TraesCS4A01G093900	Gene3D:3.40.50.2000	InterPro:Glyco_trans_1	ncoils:Coil	PANTHER:PTHR12526
PANTHER:PTHR12526:SF427	PFAM:PF00534	SEG:seg	SUPFAM:SSF53756	MapMan:5.3.3	:

Description

No Description!

Coordinates

chr4A:-:101748167..101751292

Molecular Weight (calculated)

57341.9 Da

IEP (calculated)

8.761

GRAVY (calculated)

-0.396

Length

499 amino acids

Sequence
(BLAST)

001: MRCSSMLLHH LRATRRVPWK LQWPCAVGWF CEAMAMARRQ HVTIFTTASL PWMTGTAVNP LFRAAYLAKA GDWEVTLVVP WLSKGDQMLV YPNNMKFSGP
101: AEQEGYVRRW LEERTGQLPR FNINFYPGKF STEKRSILPV GDITETISDE KADIAVLEEP EHLTWYHHGR RWKNKFRKVI GVVHTNYLEY VKREKNGYIQ
201: AFLLKHINSW VTDIYCHKVI RLSGATQEVP RSVICNVHGV NPKFIEIGKL KHRQISQREQ SFFKGAYYIG KMVWSKGYTE LLHLLQKHQK ELSGLKMELY
301: GSGEDSGEVK ASAEKLNLDV RVYPGRDHAD SIFHDYKVFI NPSTTDVVCT TTAEALAMGK IVICANHPSN EFFKRFPNCH MYSTEKEFVR LTMKALSEEP
401: IPLTEELRHE LSWEAATERF VRVAEIAPAT PAKQTPSTSQ RFMYINPDEL KKNMEEASAF FHNTISGFEA ARCVFGAIPN SLQPDEQQCK ELGWSPQGL

Best Arabidopsis Sequence Match ( AT4G00550.2 )
(BLAST)

001: MTNQQEQHIA IFTTASIPWL TGTAVNPLFR AAYLANDGER RVTLVIPWLT LKHQKLVYPN SITFSSPSEQ EAYVRQWLEE RVSFRLAFEI RFYPGKFAID
101: KRSILPVGDI SDAIPDEEAD IAVLEEPEHL TWFHHGQKWK TKFNYVIGIV HTNYLEYVKR EKQGRVKAFF LKYLNSWVVG IYCHKVIRLS AATQEYPKSI
201: VCNVHGVNPK FLEIGLRKLE QQKLQEQPFT KGAYYIGKMV WSKGYKELLK LLEKHQKELA ELEVDLYGDG EDSEEIKEAA RKLDLTVNVY PGRDHADSLF
301: HNYKVFLNPS TTDVVCTTTA EALAMGKIVV CANHISNKFF KQFPNCRTYD DGQGFVRATL KALGEQPSQL TEQQRHELSW EAATQRFIKV SDLNRLSRAD
401: SNLSKRSVFA SSSISVGKNL EDMSAYIHFL ASGFEASRTA FGAIPGSLQP DEELCRDLGL SLNTPSPNTR KQD

Arabidopsis Description

DGD2Digalactosyldiacylglycerol synthase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W1S1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.