Factsheet for VIT_11s0016g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P02460_001	Banana	cytosol, nucleus	7.0	72.41
KRH15982	Soybean	cytosol	27.67	70.94
VIT_15s0046g03730.t01	Wine grape	cytosol	95.0	61.16
KRH40509	Soybean	cytosol	78.0	50.54
KRH00685	Soybean	cytosol	78.0	50.54
PGSC0003DMT400026609	Potato	cytosol	73.67	47.94
PGSC0003DMT400000445	Potato	endoplasmic reticulum	73.67	47.84
Solyc10g017580.2.1	Tomato	cytosol	73.33	47.72
GSMUA_AchrUn_...	Banana	cytosol	74.33	47.25
AT4G00550.1	Thale cress	cytosol	72.67	46.09
Solyc01g094170.2.1	Tomato	cytosol	64.33	45.84
GSMUA_Achr10P...	Banana	cytosol	71.67	45.74
CDY07210	Canola	mitochondrion	72.33	45.59
Os03t0268300-01	Rice	golgi	70.33	45.57
Zm00001d028211_P002	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	72.0	45.47
CDY51152	Canola	mitochondrion, plastid	72.33	45.21
GSMUA_Achr9P03500_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	70.67	45.2
EER92641	Sorghum	golgi	71.33	45.05
EER92494	Sorghum	golgi	69.67	45.04
Bra037346.1-P	Field mustard	mitochondrion, plastid	72.0	44.91
Zm00001d028571_P001	Maize	golgi	69.0	43.58
Os03t0214400-01	Rice	plasma membrane	68.67	43.28
TraesCS4B01G246700.1	Wheat	mitochondrion	68.0	42.86
TraesCS4D01G211200.1	Wheat	mitochondrion	71.0	42.69
TraesCS4D01G246000.1	Wheat	mitochondrion	67.67	42.65
HORVU4Hr1G067920.1	Barley	mitochondrion	67.67	42.65
HORVU4Hr1G060440.2	Barley	mitochondrion	71.0	42.6
TraesCS4A01G093900.1	Wheat	mitochondrion	70.33	42.28
TraesCS4B01G210400.1	Wheat	mitochondrion	70.33	42.28
TraesCS4A01G058200.1	Wheat	cytosol	69.0	40.51
VIT_08s0105g00260.t01	Wine grape	cytosol	62.33	23.46
GSMUA_Achr8P02450_001	Banana	cytosol	3.67	6.79
VIT_07s0141g01080.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EntrezGene:100247315	wikigene:100247315	Gene3D:3.40.50.2000	MapMan:5.3.3	ProteinID:CBI27732	ProteinID:CBI27732.3
ncoils:Coil	UniProt:D7TC74	EMBL:FN595756	GO:GO:0003674	GO:GO:0003824	GO:GO:0016740
GO:GO:0016757	EntrezGene:LOC100247315	wikigene:LOC100247315	PANTHER:PTHR12526	PANTHER:PTHR12526:SF460	SUPFAM:SSF53756
UniParc:UPI0001984201	ArrayExpress:VIT_11s0016g00030	EnsemblPlantsGene:VIT_11s0016g00030	EnsemblPlants:VIT_11s0016g00030.t01	unigene:Vvi.9598	RefSeq:XP_002277070
RefSeq:XP_002277070.1	RefSeq:XP_010656047.1	RefSeq:XP_010656048.1	RefSeq:XP_010656049.1	RefSeq:XP_010656050.1	RefSeq:XP_010656051.1
RefSeq:XP_010656053.1	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:12199..16059

Molecular Weight (calculated)

34752.7 Da

IEP (calculated)

8.124

GRAVY (calculated)

-0.427

Length

300 amino acids

Sequence
(BLAST)

001: MDSKQHIAIF TTASLPWMTG TAVNPLFRVA YLTKGREFKV TLVIPWLSPK DQELVYPNKI ILKSPSEQEA YVRQWLGERT GFVCDFSIKF YPGKFSRDKR
101: SILVVGDITE IIPDEEADIA VLEEPEHLTW YHHGNRWKTK FRLVVGIVHT NYLEYVRREK NGRLQAFLLK YINNWVIDIY CHKVIRLSAA IQDLPRSIIC
201: NVHGVNPKFL EIGKRKNEHQ QNGDQAFSKG AYYIGKMAWS KGYKELLKLL HDHQKELTGL EVDLYGNGED SDQVQEAAKK LELDVRVHPG HDHADPLFHE

Best Arabidopsis Sequence Match ( AT4G00550.2 )
(BLAST)

001: MTNQQEQHIA IFTTASIPWL TGTAVNPLFR AAYLANDGER RVTLVIPWLT LKHQKLVYPN SITFSSPSEQ EAYVRQWLEE RVSFRLAFEI RFYPGKFAID
101: KRSILPVGDI SDAIPDEEAD IAVLEEPEHL TWFHHGQKWK TKFNYVIGIV HTNYLEYVKR EKQGRVKAFF LKYLNSWVVG IYCHKVIRLS AATQEYPKSI
201: VCNVHGVNPK FLEIGLRKLE QQKLQEQPFT KGAYYIGKMV WSKGYKELLK LLEKHQKELA ELEVDLYGDG EDSEEIKEAA RKLDLTVNVY PGRDHADSLF
301: HNYKVFLNPS TTDVVCTTTA EALAMGKIVV CANHISNKFF KQFPNCRTYD DGQGFVRATL KALGEQPSQL TEQQRHELSW EAATQRFIKV SDLNRLSRAD
401: SNLSKRSVFA SSSISVGKNL EDMSAYIHFL ASGFEASRTA FGAIPGSLQP DEELCRDLGL SLNTPSPNTR KQD

Arabidopsis Description

DGD2Digalactosyldiacylglycerol synthase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W1S1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.