Factsheet for TraesCS4B01G210400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G211200.1	Wheat	mitochondrion	98.2	98.2
TraesCS4A01G093900.1	Wheat	mitochondrion	97.19	97.19
HORVU4Hr1G060440.2	Barley	mitochondrion	95.59	95.4
Os03t0268300-01	Rice	golgi	84.37	90.93
EER92494	Sorghum	golgi	80.36	86.42
Zm00001d028571_P001	Maize	golgi	80.76	84.84
VIT_11s0016g00030.t01	Wine grape	cytosol	42.28	70.33
GSMUA_Achr10P...	Banana	cytosol	65.73	69.79
GSMUA_Achr8P02460_001	Banana	cytosol, nucleus	4.01	68.97
GSMUA_Achr9P03500_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	63.13	67.16
VIT_15s0046g03730.t01	Wine grape	cytosol	61.52	65.88
GSMUA_Achr8P02450_001	Banana	cytosol	21.24	65.43
KRH40509	Soybean	cytosol	60.12	64.79
KRH00685	Soybean	cytosol	59.52	64.15
CDY51152	Canola	mitochondrion, plastid	61.12	63.54
TraesCS4B01G246700.1	Wheat	mitochondrion	60.52	63.45
Bra037346.1-P	Field mustard	mitochondrion, plastid	61.12	63.41
KRH15982	Soybean	cytosol	14.83	63.25
CDY07210	Canola	mitochondrion	60.32	63.24
AT4G00550.1	Thale cress	cytosol	59.92	63.21
PGSC0003DMT400000445	Potato	endoplasmic reticulum	56.31	60.82
PGSC0003DMT400026609	Potato	cytosol	54.71	59.22
Solyc10g017580.2.1	Tomato	cytosol	54.51	59.0
Solyc01g094170.2.1	Tomato	cytosol	49.7	58.91
VIT_07s0141g01080.t01	Wine grape	cytosol	11.02	49.11
TraesCS2B01G314000.1	Wheat	mitochondrion	52.51	30.05

Protein Annotations

EnsemblPlants:TraesCS4B01G210400.1	EnsemblPlantsGene:TraesCS4B01G210400	Gene3D:3.40.50.2000	InterPro:Glyco_trans_1	ncoils:Coil	PANTHER:PTHR12526
PANTHER:PTHR12526:SF427	PFAM:PF00534	SEG:seg	SUPFAM:SSF53756	MapMan:5.3.3	:

Description

No Description!

Coordinates

chr4B:+:449122533..449125620

Molecular Weight (calculated)

57321.9 Da

IEP (calculated)

8.835

GRAVY (calculated)

-0.401

Length

499 amino acids

Sequence
(BLAST)

001: MRYSSMLLHH LRASGRIPWK LQWPCAVGWF CEAMAMARRQ HITIFTTASL PWMTGTAVNP LFRAAYLAKA GDWEVTLVVP WLSKGDQMLV YPNKMKFSGP
101: AEQEGYVRRW LEERTGPLPR FNINFYPGKF STEKRSILPV GDITETISDE KADIAVLEEP EHLTWYHHGR RWKNKFRKVI GVAHTNYLEY VKREKNGYIH
201: AFLLKHINSW VTDIYCHKVI RLSGATQEVP RSVICNVHGV NPKFIEIGKL KHQQISQREQ SFFKGAYYIG KMVWSKGYTE LLQLLQKHQK ELSGLKMELY
301: GSGEDSGEVK ASAEKLSLDV RVYPGRDHAD SIFHDYKVFI NPSTTDVVCT TTAEALAMGK IVICANHPSN EFFKRFPNCH MYSTEKEFVR LTMKALSEEP
401: IPLTEELRHE LSWEAATERF VRVAEIAPAT PAKQHPSTSQ RFMYINPDEL KKNMEEASAF FHNTISGFEA ARCVFGAIPN SLQPDEQQCK ELGWRPQGL

Best Arabidopsis Sequence Match ( AT4G00550.2 )
(BLAST)

001: MTNQQEQHIA IFTTASIPWL TGTAVNPLFR AAYLANDGER RVTLVIPWLT LKHQKLVYPN SITFSSPSEQ EAYVRQWLEE RVSFRLAFEI RFYPGKFAID
101: KRSILPVGDI SDAIPDEEAD IAVLEEPEHL TWFHHGQKWK TKFNYVIGIV HTNYLEYVKR EKQGRVKAFF LKYLNSWVVG IYCHKVIRLS AATQEYPKSI
201: VCNVHGVNPK FLEIGLRKLE QQKLQEQPFT KGAYYIGKMV WSKGYKELLK LLEKHQKELA ELEVDLYGDG EDSEEIKEAA RKLDLTVNVY PGRDHADSLF
301: HNYKVFLNPS TTDVVCTTTA EALAMGKIVV CANHISNKFF KQFPNCRTYD DGQGFVRATL KALGEQPSQL TEQQRHELSW EAATQRFIKV SDLNRLSRAD
401: SNLSKRSVFA SSSISVGKNL EDMSAYIHFL ASGFEASRTA FGAIPGSLQP DEELCRDLGL SLNTPSPNTR KQD

Arabidopsis Description

DGD2Digalactosyldiacylglycerol synthase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W1S1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.