CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08505	Canola	cytosol, plastid	95.53	95.18
AT3G11670.1	Thale cress	plastid	86.97	86.76
TraesCSU01G192800.1	Wheat	mitochondrion	44.54	77.87
PGSC0003DMT400072559	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	7.69	75.61
KRH75753	Soybean	mitochondrion	13.9	72.73
TraesCSU01G187100.2	Wheat	cytosol	52.48	72.56
Solyc10g081870.1.1	Tomato	cytosol, extracellular, peroxisome	10.42	72.41
TraesCSU01G186800.1	Wheat	plasma membrane	52.61	70.2
KRH68005	Soybean	nucleus	67.25	69.22
KRG96264	Soybean	nucleus	67.12	68.74
PGSC0003DMT400054943	Potato	cytosol	64.02	66.67
VIT_08s0105g00260.t01	Wine grape	cytosol	65.88	66.62
Solyc01g007100.2.1	Tomato	cytosol, plastid	63.52	65.98
PGSC0003DMT400072563	Potato	plastid	64.39	64.88
GSMUA_Achr10P...	Banana	cytosol	63.52	64.73
GSMUA_Achr11P...	Banana	cytosol	65.01	64.29
Solyc10g081900.1.1	Tomato	plastid	63.65	64.29
KXG27790	Sorghum	nucleus	57.82	63.14
TraesCS4D01G112200.1	Wheat	nucleus	56.58	62.72
TraesCS4A01G200600.1	Wheat	nucleus	56.58	62.64
Os11t0158400-01	Rice	cytosol	56.7	62.09
Zm00001d053149_P002	Maize	plastid	57.69	61.02
HORVU4Hr1G020770.3	Barley	nucleus	56.08	59.47
CDY07210	Canola	mitochondrion	30.77	52.1
CDY51152	Canola	mitochondrion, plastid	31.02	52.08
KRH49694	Soybean	mitochondrion	21.96	32.6

Protein Annotations

EnsemblPlants:CDY01047	EnsemblPlantsGene:GSBRNA2T00111084001	Gene3D:3.40.50.2000	InterPro:Glyco_trans_1	PANTHER:PTHR12526	PANTHER:PTHR12526:SF532
PFAM:PF00534	ProteinID:CDY01047	ProteinID:CDY01047.1	SEG:seg	SUPFAM:SSF53756	UniParc:UPI0004EEE0E2
MapMan:5.3.3	:	:	:	:	:

Description

BnaC05g41530D

Coordinates

chrLK031923:+:882026..885814

Molecular Weight (calculated)

91451.5 Da

IEP (calculated)

7.465

GRAVY (calculated)

-0.490

Length

806 amino acids

Sequence
(BLAST)

001: MAKEIQSQSP PSPTTTGITF SSSSSSPSLS MMLSSTNAFS LLSKGWREVR DSADADLQLM RKRANSVKNL ASTFDRKIEN FLNNSAMSAF PVVSSSPSAF
101: GNEIGIMKKL EPKISEFRRV YSAPEISRKV MERWGPAKAK LGIDLSAIKK AIVSEMDLDE REGVLEMRRR RDRDRFREFY AEGEGEGSFG DWKPIRSLKS
201: RFKEFEKRSS LELLIGFKNS ELVEKLKASF QSLYKETDEA KDVPPLDVPE LLASLVRQSE PFLDQIGVRK DLCDRVVENL YKCKSQHLWR LPSAQTSDLV
301: ENDNHVDDLD TRIASVLQST GHHYDGGFWT DFLKPETPES KRHVAIVTTA SLPWMTGTAV NPLFRAAYLA KSAKQSVTLV VPWLCESDQE LVYPNNLTFS
401: SPEEQESYIR TWLEERIGFK ADFKISFYPG KFSKERRSIF PAGDTSQFIP SKDADIAILE EPEHLNWYHH GKRWTDKFNH VVGIVHTNYL EYIKREKHGA
501: IQAFFVNHVN NWVTRAYCDK VLRLSGATQD LPKSVICNVH GVNPKFLMIG EKIAEESSRG EQAFSKGAYF LGKMVWAKGY RELIDLMAKH KSDLGSFNLD
601: VYGNGEDAVE VQRAAQKLDL NLNFLKGRDH ADDALHKYKV FINPSISDVL CTATAEALAM GKFVVCADHP SNEFFRSFPN CLTYKTSEDF VNKVKEAMSK
701: EPLPLTPEQM YNLSWEAATQ RFMEYSDLDK ILNDEDGGKR MRKSRSVPSF DEVIDGGLAF THYVLTGNDF LRLCSGATPK TKDYDKQHCK DLKLVPPQAH
801: KPVYGW

Best Arabidopsis Sequence Match ( AT3G11670.1 )
(BLAST)

001: MVKETLIPPS STSMTTGTSS SSSLSMTLSS TNALSFLSKG WREVWDSADA DLQLMRDRAN SVKNLASTFD REIENFLNNS ARSAFPVGSP SASSFSNEIG
101: IMKKLQPKIS EFRRVYSAPE ISRKVMERWG PARAKLGMDL SAIKKAIVSE MELDERQGVL EMSRLRRRRN SDRVRFTEFF AEAERDGEAY FGDWEPIRSL
201: KSRFKEFEKR SSLEILSGFK NSEFVEKLKT SFKSIYKETD EAKDVPPLDV PELLACLVRQ SEPFLDQIGV RKDTCDRIVE SLCKCKSQQL WRLPSAQASD
301: LIENDNHGVD LDMRIASVLQ STGHHYDGGF WTDFVKPETP ENKRHVAIVT TASLPWMTGT AVNPLFRAAY LAKAAKQSVT LVVPWLCESD QELVYPNNLT
401: FSSPEEQESY IRKWLEERIG FKADFKISFY PGKFSKERRS IFPAGDTSQF ISSKDADIAI LEEPEHLNWY YHGKRWTDKF NHVVGIVHTN YLEYIKREKN
501: GALQAFFVNH VNNWVTRAYC DKVLRLSAAT QDLPKSVVCN VHGVNPKFLM IGEKIAEERS RGEQAFSKGA YFLGKMVWAK GYRELIDLMA KHKSELGSFN
601: LDVYGNGEDA VEVQRAAKKH DLNLNFLKGR DHADDALHKY KVFINPSISD VLCTATAEAL AMGKFVVCAD HPSNEFFRSF PNCLTYKTSE DFVSKVQEAM
701: TKEPLPLTPE QMYNLSWEAA TQRFMEYSDL DKILNNGEGG RKMRKSRSVP SFNEVVDGGL AFSHYVLTGN DFLRLCTGAT PRTKDYDNQH CKDLNLVPPH
801: VHKPIFGW

Arabidopsis Description

DGD1DGD1 [Source:UniProtKB/TrEMBL;Acc:A0A178VKL1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.