Factsheet for VIT_19s0015g00250.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 9
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0015g00210.t01	Wine grape	plasma membrane	88.29	89.57
VIT_19s0015g00190.t01	Wine grape	plasma membrane	84.0	84.97
VIT_19s0015g00230.t01	Wine grape	plasma membrane	84.0	84.73
Solyc07g065380.2.1	Tomato	plasma membrane	68.0	68.0
PGSC0003DMT400057089	Potato	plasma membrane	67.14	67.34
CDY42395	Canola	plasma membrane	58.86	63.58
Bra030826.1-P	Field mustard	plasma membrane	58.57	63.27
CDY10522	Canola	plasma membrane	58.57	63.27
AT1G55910.1	Thale cress	plasma membrane	58.29	62.58
KRG98522	Soybean	plasma membrane	62.29	60.56
KRH46349	Soybean	plasma membrane	60.0	60.17
VIT_06s0004g05070.t01	Wine grape	plasma membrane	54.29	58.1

Protein Annotations

EntrezGene:100248132	wikigene:100248132	MapMan:24.2.11.1	ProteinID:CCB61996	ProteinID:CCB61996.1	UniProt:F6I541
EMBL:FN596747	GO:GO:0003674	GO:GO:0005215	GO:GO:0005385	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001	GO:GO:0046873	GO:GO:0055085
GO:GO:0071577	EntrezGene:LOC100248132	wikigene:LOC100248132	PFAM:PF02535	PANTHER:PTHR11040	PANTHER:PTHR11040:SF23
SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI00015CB60E	ArrayExpress:VIT_19s0015g00250	EnsemblPlantsGene:VIT_19s0015g00250	EnsemblPlants:VIT_19s0015g00250.t01
RefSeq:XP_002265697	RefSeq:XP_002265697.1	RefSeq:XP_010644553.1	InterPro:ZIP	SEG:seg	:

Description

No Description!

Coordinates

chr19:-:8237691..8239518

Molecular Weight (calculated)

37164.4 Da

IEP (calculated)

4.560

GRAVY (calculated)

0.680

Length

350 amino acids

Sequence
(BLAST)

001: MSRSLLTLSL GLLVLAAVAA AHGGHHADDD DDVDVDAPSS EGVDLRAKPL ILVKIYCLIL EFVGTFIAGV SPYFLKMNET FLVLGTQFAG GVFLGTAMMH
101: FLSDSNETFG DLTSVEYPFA FMLACAGYLM TMFSDGLIFY VYGKGASGGE GDVELQANMQ GKSSSNGGNS VSLGQVQNRT EVPFANAPLK TATSLGDSIL
201: LIFALCFHSV FEGIAVGVAE TQADAWRALW TICLHKIFAA IAMGIALLRM IPDRPLLSCV AYAFAFAISS PVGVAIGIVI DATTQGAVAD WIFAISMGLA
301: CGIFIYVSIN HLLSKGYTCQ RTVPFDTPNY KFLAVLLGIG VIAVVMIWDT

Best Arabidopsis Sequence Match ( AT1G55910.1 )
(BLAST)

001: MSRSLVFFFL FLVLVVPCLS HGTGGDHDDD EASHVKSSDL KSKSLISVKI ACLVIIFVLT FISGVSPYFL KWSQGFLVLG TQFAGGVFLA TALMHFLSDA
101: DETFRGLLTA EGESEPSPAY PFAYMLACAG FMLTMLADSV IAHIYSKTQN DLELQGEDKS NQRSATTETS IGDSILLIVA LCFHSVFEGI AIGISETKSD
201: AWRALWTITL HKIFAAIAMG IALLRMIPDR PLFSSITYSF AFAISSPIGV AIGIVIDATT QGSIADWIFA LSMSLACGVF VYVSVNHLLA KGYRPNKKVH
301: VDEPRYKFLA VLFGVVVIAI VMIWDT

Arabidopsis Description

ZIP11Zinc transporter 11 [Source:UniProtKB/Swiss-Prot;Acc:Q94EG9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.