Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 6
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | plasma membrane | 68.58 | 76.28 |
| KRH38174 | Soybean | plasma membrane | 75.46 | 74.77 |
| KRG94282 | Soybean | plasma membrane | 76.15 | 74.61 |
| GSMUA_Achr11P... | Banana | plasma membrane | 75.23 | 74.04 |
| TraesCS3D01G530400.1 | Wheat | plasma membrane | 72.02 | 70.09 |
| TraesCS3A01G525200.1 | Wheat | plasma membrane | 72.02 | 70.09 |
| AT1G71090.1 | Thale cress | plasma membrane | 73.39 | 70.02 |
| TraesCS3B01G592500.1 | Wheat | plasma membrane | 71.79 | 69.87 |
| HORVU3Hr1G114270.1 | Barley | plasma membrane | 71.79 | 69.09 |
| Zm00001d051044_P001 | Maize | golgi, plasma membrane, vacuole | 71.33 | 68.96 |
| CDX72776 | Canola | plasma membrane | 71.79 | 68.79 |
| Os08t0191000-01 | Rice | golgi, plasma membrane, plastid | 71.33 | 68.35 |
| CDX96302 | Canola | golgi, plasma membrane | 71.79 | 68.19 |
| Bra016159.1-P | Field mustard | golgi, plasma membrane | 71.79 | 68.19 |
| EES07131 | Sorghum | golgi, plasma membrane | 70.64 | 68.14 |
| HORVU0Hr1G031980.1 | Barley | golgi, plasma membrane | 71.79 | 67.75 |
| VIT_14s0006g01970.t01 | Wine grape | golgi, mitochondrion, plasma membrane, plastid | 74.54 | 67.71 |
| VIT_18s0001g00940.t01 | Wine grape | plasma membrane | 57.8 | 67.2 |
| VIT_18s0001g00260.t01 | Wine grape | plasma membrane | 44.95 | 63.64 |
| VIT_08s0056g00310.t01 | Wine grape | cytosol, golgi, plasma membrane | 39.68 | 42.72 |
| VIT_04s0044g01870.t01 | Wine grape | plasma membrane | 27.29 | 31.32 |
| VIT_07s0031g02200.t01 | Wine grape | plasma membrane | 27.29 | 28.27 |
| VIT_04s0044g01850.t01 | Wine grape | golgi, plasma membrane, vacuole | 26.38 | 27.51 |
| VIT_04s0044g01860.t01 | Wine grape | golgi, plasma membrane, vacuole | 25.92 | 27.03 |
| VIT_04s0044g01880.t01 | Wine grape | plastid | 26.83 | 25.49 |
| VIT_04s0044g01890.t01 | Wine grape | endoplasmic reticulum, extracellular | 7.34 | 24.06 |
Protein Annotations
| EntrezGene:100249273 | wikigene:100249273 | MapMan:11.2.4.2 | MapMan:24.2.5.2.2 | ProteinID:CCB50847 | ProteinID:CCB50847.1 |
| UniProt:F6HFJ8 | EMBL:FN595752 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0006810 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009719 | GO:GO:0009733 |
| GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010252 | GO:GO:0010311 | GO:GO:0010315 | GO:GO:0010329 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0040007 | GO:GO:0040009 | GO:GO:0055085 | EntrezGene:LOC100249273 |
| wikigene:LOC100249273 | InterPro:Mem_trans | PFAM:PF03547 | PANTHER:PTHR31419 | PANTHER:PTHR31419:SF7 | TMHMM:TMhelix |
| UniParc:UPI0001982981 | ArrayExpress:VIT_01s0011g04640 | EnsemblPlantsGene:VIT_01s0011g04640 | EnsemblPlants:VIT_01s0011g04640.t01 | unigene:Vvi.9459 | RefSeq:XP_002280374 |
| RefSeq:XP_002280374.1 | RefSeq:XP_019074734.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1:-:4174779..4176173
Molecular Weight (calculated)
47962.7 Da
IEP (calculated)
6.507
GRAVY (calculated)
0.676
Length
436 amino acids
Sequence
(BLAST)
(BLAST)
001: MESSREDLVS AVVPLLKLLS LTVIGLVLAH PKTQMIPRST FKLLSKLVFA LFLPCLIFTN LGQFITLENF TFWWFVPVNV LVSTLIGCFL GYLVVIICRP
101: PAQFNRFTII MTGLGNTGNL PLAIVGSVCH TANNPFGPDC YGKGVAYVSF AQWVAVILVY TFVYHMMEPP MNFYEIVDEG IEIGEPQLVN NISRPLLVEA
201: EWPGIEDKET EHSKTPFIAG VFNSISNLTM SDLDLVGETG NTRSESIRCF AEPKVVRRMR VVAEQTPIKH ILQPPTIASL LAIIVGMVPQ FKSFVFGHDA
301: PLSFITDSLE ILAGAMVPSV MLVLGGMLAE GPNDSKLGLR TTIGISVARL LVLPLLGIGI VFLADKLNFL VHGDQMSIFV LLLQYTTPSA ILLGAIASLR
401: GYAVKEASAL LFWQHVFALF SLSLYIVIYF KLLSYI
101: PAQFNRFTII MTGLGNTGNL PLAIVGSVCH TANNPFGPDC YGKGVAYVSF AQWVAVILVY TFVYHMMEPP MNFYEIVDEG IEIGEPQLVN NISRPLLVEA
201: EWPGIEDKET EHSKTPFIAG VFNSISNLTM SDLDLVGETG NTRSESIRCF AEPKVVRRMR VVAEQTPIKH ILQPPTIASL LAIIVGMVPQ FKSFVFGHDA
301: PLSFITDSLE ILAGAMVPSV MLVLGGMLAE GPNDSKLGLR TTIGISVARL LVLPLLGIGI VFLADKLNFL VHGDQMSIFV LLLQYTTPSA ILLGAIASLR
401: GYAVKEASAL LFWQHVFALF SLSLYIVIYF KLLSYI
001: MSGFSSGNVN SRVVDILSGV VPLLKLICLT VIGLLLAHPK TQLVPRATFR LLSKLVFALF LPCLIFTELG ESITLDNIVQ WWFIPVNVLL SAVVGSLIGY
101: LVVLICRPPP EFNRFTIVMT AFGNTGNLLL AIVSSVCHTK TNPFGPNCNS RGVSYVSFAQ WVAVILVYTV VYHMMEPPLE YYEVVEEEGV EIEEINVENH
201: DASRPLLVEA EWPGIEDKET EHCKTPFIAR VFNSISSFSQ TSFPEVDLGG EYGGESSSPR SIQCLAEPRV MRRIRVVAEQ TPVKHILQPP TIASLLAIII
301: GSVPQLKSVV FGYDAPLSFI TDSLNIMGSA MVPSVMLVLG GMLSEGPNES TLGLRTTIGI SVARLLVLPL VGIGIVMSAD KLGLISSADP MFKFVLLLQY
401: STPSAILLGA IASLRGYAVR EASALLFWQH IFALLSLTFY IVIFFKLTVE TTVQGMQ
101: LVVLICRPPP EFNRFTIVMT AFGNTGNLLL AIVSSVCHTK TNPFGPNCNS RGVSYVSFAQ WVAVILVYTV VYHMMEPPLE YYEVVEEEGV EIEEINVENH
201: DASRPLLVEA EWPGIEDKET EHCKTPFIAR VFNSISSFSQ TSFPEVDLGG EYGGESSSPR SIQCLAEPRV MRRIRVVAEQ TPVKHILQPP TIASLLAIII
301: GSVPQLKSVV FGYDAPLSFI TDSLNIMGSA MVPSVMLVLG GMLSEGPNES TLGLRTTIGI SVARLLVLPL VGIGIVMSAD KLGLISSADP MFKFVLLLQY
401: STPSAILLGA IASLRGYAVR EASALLFWQH IFALLSLTFY IVIFFKLTVE TTVQGMQ
Arabidopsis Description
PILS2Protein PIN-LIKES 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C999]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.