Factsheet for VIT_04s0044g01860.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 7
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0044g01850.t01	Wine grape	golgi, plasma membrane, vacuole	77.99	77.99
KRH07852	Soybean	golgi, plasma membrane, vacuole	16.51	60.0
PGSC0003DMT400046054	Potato	plasma membrane	55.5	58.59
Solyc02g037550.2.1	Tomato	plasma membrane	55.26	58.33
VIT_04s0044g01890.t01	Wine grape	endoplasmic reticulum, extracellular	18.18	57.14
VIT_04s0044g01870.t01	Wine grape	plasma membrane	51.67	56.84
TraesCS5D01G275200.1	Wheat	plasma membrane	41.39	55.99
CDY45981	Canola	golgi, plasma membrane, vacuole	20.33	55.19
GSMUA_Achr3P03690_001	Banana	plasma membrane	55.02	54.5
CDY29492	Canola	plasma membrane	48.33	52.74
HORVU5Hr1G073630.3	Barley	golgi, plasma membrane, vacuole	51.2	52.07
Bra015736.1-P	Field mustard	golgi, plasma membrane, vacuole	47.61	51.16
Solyc03g031990.2.1	Tomato	golgi, plasma membrane, vacuole	50.72	51.08
AT1G76520.2	Thale cress	plasma membrane	47.61	51.03
CDY20402	Canola	endoplasmic reticulum, plasma membrane, vacuole	47.13	50.9
CDX87589	Canola	golgi, plasma membrane, vacuole	47.37	50.9
PGSC0003DMT400048072	Potato	plasma membrane	50.48	50.84
EER99100	Sorghum	golgi, plasma membrane, vacuole	50.24	50.72
Bra003716.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	46.65	50.26
CDX68094	Canola	endoplasmic reticulum, plasma membrane, vacuole	46.65	50.26
EER99101	Sorghum	golgi, plasma membrane, vacuole	49.52	50.0
Bra008264.1-P	Field mustard	golgi, plasma membrane, vacuole	47.37	49.75
CDX85953	Canola	endoplasmic reticulum, plasma membrane, vacuole	43.06	49.32
KXG35918	Sorghum	plasma membrane	48.56	49.03
VIT_04s0044g01880.t01	Wine grape	plastid	52.63	47.93
TraesCS5A01G267300.1	Wheat	extracellular	27.99	47.37
KRH07851	Soybean	plasma membrane	33.01	46.46
Os09t0491740-01	Rice	golgi, plasma membrane, vacuole	42.11	46.44
AT1G76530.1	Thale cress	plasma membrane	45.93	46.27
TraesCS5B01G267800.2	Wheat	golgi, plasma membrane, vacuole	41.39	45.89
Bra025857.1-P	Field mustard	plasma membrane	44.02	45.66
AT1G20925.1	Thale cress	plasma membrane	48.33	42.8
CDY31514	Canola	mitochondrion, plasma membrane	48.33	42.26
VIT_07s0031g02200.t01	Wine grape	plasma membrane	40.67	40.38
HORVU5Hr1G073670.1	Barley	cytosol	51.2	39.93
VIT_08s0056g00310.t01	Wine grape	cytosol, golgi, plasma membrane	26.55	27.41
VIT_01s0011g04640.t01	Wine grape	plasma membrane	27.03	25.92
VIT_14s0006g01970.t01	Wine grape	golgi, mitochondrion, plasma membrane, plastid	26.55	23.12
VIT_18s0001g00940.t01	Wine grape	plasma membrane	19.86	22.13
VIT_18s0001g00260.t01	Wine grape	plasma membrane	15.07	20.45

Protein Annotations

EntrezGene:100249991	wikigene:100249991	MapMan:11.2.4.2	MapMan:24.2.5.2.2	ProteinID:CBI37492	ProteinID:CBI37492.3
UniProt:D7U495	EMBL:FN596506	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	EntrezGene:LOC100249991	wikigene:LOC100249991	InterPro:Mem_trans	PFAM:PF03547
PANTHER:PTHR31651	PANTHER:PTHR31651:SF6	TMHMM:TMhelix	UniParc:UPI00015CC5A5	ArrayExpress:VIT_04s0044g01860	EnsemblPlantsGene:VIT_04s0044g01860
EnsemblPlants:VIT_04s0044g01860.t01	RefSeq:XP_002263557	RefSeq:XP_002263557.2	RefSeq:XP_010649328.1	RefSeq:XP_010649329.1	SEG:seg

Description

No Description!

Coordinates

chr4:+:23656168..23670223

Molecular Weight (calculated)

45037.9 Da

IEP (calculated)

5.698

GRAVY (calculated)

0.707

Length

418 amino acids

Sequence
(BLAST)

001: MGFLSLFVVA LVPILKVLLV TGVGLLIALE RIDLLGANAR RNLNAIVFYV FNPALVSSNL AKTITFSSLV TMWFMPVNIL LTFVIGSALG WVLIKITRTP
101: QHLQGLVLGC CSAGNLGNLL LIIIPAICEE EDNPFGDSDC STNGEAYASL SLAIGAIGIW SYVYTIMRIS ANKCKKEINL DDSTISIRTS GETLEILSEG
201: CTEALLPSKD CPSSRECSDE VELAHAGSEG KQKVPFLEKI KQQVEILMEK IDLKKVFAPS TIGVIVGFFI GLISPIRKLI IGDSAPLHVI ESSAYFVGEA
301: AVPSTTLIMG ANLLKGLKGS DVSIVVILGI MAVRYIALPL LGVVVVKAAH HFGLVGSNSL FQFVLMLQYA LPPAMSTGTM SQLFEFGQSE CSVIMLWTYA
401: VAAFSLTLWS SFFMWLVS

Best Arabidopsis Sequence Match ( AT1G20925.1 )
(BLAST)

001: MSLTQSAKLH IIHQSIGKIT TRLYDTSPFH GDSHCKQRRV KDNCIQFNMN ISNVLKCYSE IESFSINQRI RRSISLFLSI LRSFYSMRMR LLDLFITSSI
101: PVAKILLITG IGFYLALDQV NILNHDARKQ LNNIVFYVFS PSLVASSLSE TITYESMVKM WFMPLNVLLT FIIGSFLGWI VIKITKPPSH LRGIIVGCCA
201: AGNLGNMPLI IIPAICNEKG SPFGDPESCE KFGLGYIALS MAIGAIYIWT YVYNLMRMLA NPAGETAINS TSSTMPLISP KVEVAEQVGT WGKVKQRVCS
301: VAEKINLRTI FAPSTIAALI ALAVGLNPLL RKLLVGNTAP LRVIEDSVSL LGDGAIPVLT LIVGGNLLNG LRGSGINKSV IMGVVVVRYL LLPILGVFIV
401: RGAHYLGLVT SEPLYQFVLL LQYVVPPAMN LGTITQLFGS GESECSVILF WSYALASVSL TVWPTFFMWL VA

Arabidopsis Description

PILS1Protein PIN-LIKES 1 [Source:UniProtKB/Swiss-Prot;Acc:F4HWB6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.