Factsheet for PGSC0003DMT400048072

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 8
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g031990.2.1	Tomato	golgi, plasma membrane, vacuole	96.63	96.63
PGSC0003DMT400046054	Potato	plasma membrane	51.08	53.54
TraesCS5D01G275200.1	Wheat	plasma membrane	37.59	50.49
VIT_04s0044g01860.t01	Wine grape	golgi, plasma membrane, vacuole	50.84	50.48
KRH07852	Soybean	golgi, plasma membrane, vacuole	13.98	50.43
VIT_04s0044g01850.t01	Wine grape	golgi, plasma membrane, vacuole	50.12	49.76
PGSC0003DMT400025706	Potato	endoplasmic reticulum, plasma membrane, vacuole	47.71	48.65
EER99100	Sorghum	golgi, plasma membrane, vacuole	45.3	45.41
KXG35918	Sorghum	plasma membrane	44.82	44.93
EER99101	Sorghum	golgi, plasma membrane, vacuole	44.58	44.69
GSMUA_Achr3P03690_001	Banana	plasma membrane	45.06	44.31
HORVU5Hr1G073630.3	Barley	golgi, plasma membrane, vacuole	43.37	43.8
Os09t0491740-01	Rice	golgi, plasma membrane, vacuole	37.59	41.16
TraesCS5B01G267800.2	Wheat	golgi, plasma membrane, vacuole	36.39	40.05
TraesCS5A01G267300.1	Wheat	extracellular	23.37	39.27
PGSC0003DMT400035511	Potato	plasma membrane	38.31	39.26
PGSC0003DMT400048041	Potato	plasma membrane	36.87	38.73
KRH07851	Soybean	plasma membrane	26.75	37.37
PGSC0003DMT400075596	Potato	plasma membrane	18.31	37.07
HORVU5Hr1G073670.1	Barley	cytosol	43.37	33.58
PGSC0003DMT400071229	Potato	cytosol, golgi, plasma membrane	26.99	26.42
PGSC0003DMT400078752	Potato	plasma membrane	26.51	24.34
Zm00001d024842_P002	Maize	plasma membrane	17.11	22.98

Protein Annotations

EnsemblPlants:PGSC0003DMT400048072	EnsemblPlantsGene:PGSC0003DMG400018678	EntrezGene:102598585	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:Mem_trans	PANTHER:PTHR31651	PANTHER:PTHR31651:SF6
PFAM:PF03547	PGSC:PGSC0003DMG400018678	RefSeq:XP_006343315.1	RefSeq:XP_015162340.1	RefSeq:XP_015162341.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI000296E88B	UniProt:M1BLX2	MapMan:11.2.4.2	MapMan:24.2.5.2.2	:

Description

Auxin:hydrogen symporter [Source:PGSC_GENE;Acc:PGSC0003DMG400018678]

Coordinates

chr3:-:2976443..2982482

Molecular Weight (calculated)

44843.6 Da

IEP (calculated)

6.861

GRAVY (calculated)

0.700

Length

415 amino acids

Sequence
(BLAST)

001: MNIQELFLLA LMPVLKTLLI AVVGLYLALD HVSILTAEGR HHLNNLVFYV FFPSLCASGL ISSSTETGLF SLWFVPVSIL ITFLVGSALG WILVKITRTP
101: QHLHGLVIGC CAGGNMGNLP VIIIPAICAE KNNPFGDSST CSINGMGYVS LSMGIGAIGI WSYVYNIIRA YGKRDDGDVS AYSKLRENNH SETSKRALDS
201: TTQTLLPSSN SKGDEVSAEL IYQGSMDETK VSIPTIIEKK VKSLVEYIDL SVLFRPPTVA TVIGIIIASI SPIQNFMVGS GAPLRFVESS VVLLGEAAIP
301: SMTIIMGANL LKGFKRSGVG IWLLFGIIVV RFVILPIIGV AVITVAKNLG MVGTDPLYHF VLLLQYAVPP AMAIGTITQL FEIGETECSV IMFWNYAVAA
401: VALTFWSTYF MYILS

Best Arabidopsis Sequence Match ( AT1G76520.1 )
(BLAST)

001: MVKLLELFIT SSKPVVEILL ITSVGFYMAL DGVNLLGHDA RKYLNNIVFY VFSPSLIGSR LADSVTYESL VKMWFMPVNV LLTFIIGSLL GWIVIVITKP
101: PSHLRGLILG CCAAGNLGNM PLIIIPAVCK EKGGPFGDPE SCQKYGMGYV ALSMAMGSIY IWTYVYNLMR VLSNSPVETP PSVESNYDSY KVPLISSKEE
201: ENNQKAGRWE KVKRRLVSLS QKVNLKTIFA PSTIAAMIAL VIGLITPLRK LIIGTEAPLR VLQDSVTLVG DGAVPAMTMI IGGNLLKGLR SSGMKMSSII
301: GVLVARYVLL PMSGVLIVRG AYKLDLVTSE PLYQFVLLLQ YAVPPAMNLG TITQLFGTGE SECSVIMLWT YSLASIALTV WPTFFMWLVA

Arabidopsis Description

PILS3Protein PIN-LIKES 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.