Factsheet for PGSC0003DMT400071229

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, cytosol

Predictor Summary:

plastid 1
mitochondrion 1
golgi 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g074790.1.1	Tomato	plasma membrane	96.23	96.23
GSMUA_Achr3P09660_001	Banana	golgi, plasma membrane	65.57	73.16
KRH00524	Soybean	plasma membrane	70.99	72.71
KRH40632	Soybean	plasma membrane	70.28	71.98
VIT_08s0056g00310.t01	Wine grape	cytosol, golgi, plasma membrane	67.92	71.11
Bra030441.1-P	Field mustard	golgi, plasma membrane, plastid	70.05	70.21
GSMUA_Achr9P16830_001	Banana	plasma membrane	68.63	69.95
CDY01222	Canola	golgi, plasma membrane, plastid	69.34	69.83
Bra014265.1-P	Field mustard	plasma membrane	70.75	69.61
AT5G01990.1	Thale cress	golgi, plasma membrane, vacuole	70.75	69.61
CDY58937	Canola	cytosol, golgi, plasma membrane	70.75	69.61
CDY03621	Canola	cytosol, golgi, plasma membrane	70.75	69.61
CDY70057	Canola	golgi, plasma membrane, plastid	69.34	69.5
HORVU3Hr1G080640.5	Barley	plasma membrane	66.27	65.05
Os01t0818000-01	Rice	plasma membrane	66.27	65.05
TraesCS3B01G373500.1	Wheat	plasma membrane	66.04	64.81
TraesCS3A01G341400.1	Wheat	plasma membrane	66.04	64.81
TraesCS3D01G335100.1	Wheat	plasma membrane	65.8	64.58
EES01656	Sorghum	plasma membrane	65.57	64.2
Zm00001d043083_P003	Maize	plasma membrane	64.86	63.51
TraesCS4B01G172100.1	Wheat	golgi, plasma membrane, vacuole	59.43	61.61
Os05t0481900-01	Rice	golgi, plasma membrane, plastid	62.03	60.18
TraesCS4A01G132600.1	Wheat	golgi, plasma membrane, vacuole	56.84	59.8
TraesCS4D01G174100.2	Wheat	golgi, plasma membrane, vacuole	59.43	59.72
HORVU4Hr1G050910.5	Barley	golgi, plasma membrane, plastid	60.61	53.99
PGSC0003DMT400078752	Potato	plasma membrane	39.39	36.95
PGSC0003DMT400035511	Potato	plasma membrane	28.54	29.88
PGSC0003DMT400046054	Potato	plasma membrane	27.59	29.55
PGSC0003DMT400048041	Potato	plasma membrane	27.36	29.37
PGSC0003DMT400025706	Potato	endoplasmic reticulum, plasma membrane, vacuole	27.83	28.99
PGSC0003DMT400048072	Potato	plasma membrane	26.42	26.99
PGSC0003DMT400075596	Potato	plasma membrane	11.79	24.39

Protein Annotations

EntrezGene:102589089	MapMan:11.2.4.2	MapMan:24.2.5.2.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0006810	GO:GO:0008150	GO:GO:0009719
GO:GO:0009733	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	UniProt:M1CND8	InterPro:Mem_trans
PFAM:PF03547	EnsemblPlantsGene:PGSC0003DMG400027696	PGSC:PGSC0003DMG400027696	EnsemblPlants:PGSC0003DMT400071229	PANTHER:PTHR31419	PANTHER:PTHR31419:SF1
TMHMM:TMhelix	UniParc:UPI00029580F5	RefSeq:XP_006362331.1	SEG:seg	:	:

Description

Auxin:hydrogen symporter [Source:PGSC_GENE;Acc:PGSC0003DMG400027696]

Coordinates

chr10:+:48590930..48596299

Molecular Weight (calculated)

46212.8 Da

IEP (calculated)

8.604

GRAVY (calculated)

0.692

Length

424 amino acids

Sequence
(BLAST)

001: MDRVRRILFN VLTEPQQGGQ SFITSIKIVV LPIAKVFTLC FLGFLMASKY VNILPANGRK LLNGLVFSLL LPCLIFSQLG QAITYEKLLE WWFIPVNIVL
101: ATIFGSIIGL IVATIVRPPY PYFKFTIIQI GIGNIGNVPL VLIAALCRDT SNPFGESEIC ARDGNAYISF GQWVGAIILY TYVFQMLSPP PEGSFDVEDA
201: NLPIKVPNKE KLPSHPSGSS AEQVPLLATN VAPADSSSSN KEKVKEFFKF LYETLKLKQL IQPPIIASIL AIIIGCVPVL KRLVFTSDAP LYFFTDSCLI
301: LGDAMIPCIL LALGGNLVDG PGPGSSKIGF KTTVAIVFAR LCLVPPTGLG IVMLADKLGF LPADDKMFRF VLLLQYTMPT SILAGAVANL RGCGKEAASV
401: LFWVHIFAVI SMAGWIILYL NILF

Best Arabidopsis Sequence Match ( AT5G01990.1 )
(BLAST)

001: MIARILAALA DSMEMPVAAG GGSVLGTIKI AVMPIAKVFT MCFLGLLMAS KYVNILPPSG RKLLNGLVFS LLLPCLIFSQ LGQAVTLQKM LQWWFIPVNV
101: VLGTISGSII GFIVASIVRP PYPYFKFTII QIGVGNIGNV PLVLLAALCR DTSNPFGDSE KCSIDGTAYI SFGQWVGAII LYTYVYQMFA PPPEGFDAEE
201: ENLALKTLPV DAAPEQVPLL TQNFPKDFSP TQDLLPVQST EPRGRGVSRK GKIAQIFVFL YEKLKLKQIV QPAIVASILA MILGAIPFTK KLIFTNGAPL
301: FFFTDSCMIL GDAMIPCILL ALGGNLINGP GSSKLGFKTT AAIIIGRLVL VPPVGLGIVT VADKLGFLPA DDKMFRFVLL LQHTMPTSVL SGAVANLRGC
401: GRESAAVLFW VHIFAIFSMA GWMVLYINIL F

Arabidopsis Description

PILS6Protein PIN-LIKES 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN2]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.