Factsheet for PGSC0003DMT400025706

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 5
golgi 5
plasma membrane 7
endoplasmic reticulum 6
vacuole 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g082830.2.1	Tomato	plasma membrane	93.61	96.21
CDY45981	Canola	golgi, plasma membrane, vacuole	23.59	62.34
TraesCS5D01G275200.1	Wheat	plasma membrane	46.93	61.81
CDY29492	Canola	plasma membrane	57.74	61.36
GSMUA_Achr3P03690_001	Banana	plasma membrane	61.67	59.48
PGSC0003DMT400075596	Potato	plasma membrane	29.48	58.54
Bra015736.1-P	Field mustard	golgi, plasma membrane, vacuole	54.79	57.33
CDY20402	Canola	endoplasmic reticulum, plasma membrane, vacuole	54.3	57.11
CDX87589	Canola	golgi, plasma membrane, vacuole	54.55	57.07
CDX68094	Canola	endoplasmic reticulum, plasma membrane, vacuole	54.3	56.96
Bra003716.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	54.3	56.96
AT1G76520.2	Thale cress	plasma membrane	54.55	56.92
Bra008264.1-P	Field mustard	golgi, plasma membrane, vacuole	54.55	55.78
PGSC0003DMT400046054	Potato	plasma membrane	53.81	55.3
CDX85953	Canola	endoplasmic reticulum, plasma membrane, vacuole	49.14	54.79
HORVU5Hr1G073630.3	Barley	golgi, plasma membrane, vacuole	54.79	54.26
EER99100	Sorghum	golgi, plasma membrane, vacuole	52.83	51.93
EER99101	Sorghum	golgi, plasma membrane, vacuole	52.83	51.93
Bra025857.1-P	Field mustard	plasma membrane	51.35	51.86
Os09t0491740-01	Rice	golgi, plasma membrane, vacuole	47.42	50.92
AT1G76530.1	Thale cress	plasma membrane	51.84	50.84
TraesCS5A01G267300.1	Wheat	extracellular	30.71	50.61
KXG35918	Sorghum	plasma membrane	51.35	50.48
CDY31514	Canola	mitochondrion, plasma membrane	57.99	49.37
AT1G20925.1	Thale cress	plasma membrane	57.25	49.36
TraesCS5B01G267800.2	Wheat	golgi, plasma membrane, vacuole	45.7	49.34
PGSC0003DMT400048072	Potato	plasma membrane	48.65	47.71
PGSC0003DMT400035511	Potato	plasma membrane	43.98	44.2
PGSC0003DMT400048041	Potato	plasma membrane	42.26	43.54
HORVU5Hr1G073670.1	Barley	cytosol	54.79	41.6
PGSC0003DMT400071229	Potato	cytosol, golgi, plasma membrane	28.99	27.83
PGSC0003DMT400078752	Potato	plasma membrane	28.75	25.89

Protein Annotations

EntrezGene:102586886	MapMan:11.2.4.2	MapMan:24.2.5.2.2	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	UniProt:M1ALW6	InterPro:Mem_trans	PFAM:PF03547
EnsemblPlantsGene:PGSC0003DMG400009927	PGSC:PGSC0003DMG400009927	EnsemblPlants:PGSC0003DMT400025706	PANTHER:PTHR31651	PANTHER:PTHR31651:SF6	TMHMM:TMhelix
UniParc:UPI00029655A1	RefSeq:XP_006342188.1	RefSeq:XP_015161930.1	SEG:seg	:	:

Description

Auxin efflux carrier family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009927]

Coordinates

chr4:+:72001626..72007095

Molecular Weight (calculated)

43928.1 Da

IEP (calculated)

9.885

GRAVY (calculated)

0.642

Length

407 amino acids

Sequence
(BLAST)

001: MGLLDLFITA SMPVLKVLLI TALGLILALD RIDLLGQDAR KHLNNIVFFV LNPALVSSNL AKTITYESLK KLWFMPFNIL FTFIVGSILG WAVLQITRPP
101: QHLRGLVVGC CAAGNLGNML LIIIPAVCKE KGSPFGDPGV CHTYGMSYAS LSMAVGAIYL WSYVYNIVRI SSSRSSKEVG INDSSASICS REGSISTESL
201: LPAKAPPEQL GIPSTRFDHK TQAHHGARLK QFMENVSRKI NLKRLLAPST TGAIAGFTVG LVPQIRKLMI GDVAPLRVIE NSAILLGDGA IPLLTLIMGG
301: NLLKGLTGSG IQKSLLLGII VVRYIALPLI GIVVVKGAIR LGLVQHDPLY QFVLLLQFAL PPAMNIGTIT QLFGAGESEC SVIMFWAYAL ASIALTLWTT
401: FFMWLVS

Best Arabidopsis Sequence Match ( AT1G20925.1 )
(BLAST)

001: MSLTQSAKLH IIHQSIGKIT TRLYDTSPFH GDSHCKQRRV KDNCIQFNMN ISNVLKCYSE IESFSINQRI RRSISLFLSI LRSFYSMRMR LLDLFITSSI
101: PVAKILLITG IGFYLALDQV NILNHDARKQ LNNIVFYVFS PSLVASSLSE TITYESMVKM WFMPLNVLLT FIIGSFLGWI VIKITKPPSH LRGIIVGCCA
201: AGNLGNMPLI IIPAICNEKG SPFGDPESCE KFGLGYIALS MAIGAIYIWT YVYNLMRMLA NPAGETAINS TSSTMPLISP KVEVAEQVGT WGKVKQRVCS
301: VAEKINLRTI FAPSTIAALI ALAVGLNPLL RKLLVGNTAP LRVIEDSVSL LGDGAIPVLT LIVGGNLLNG LRGSGINKSV IMGVVVVRYL LLPILGVFIV
401: RGAHYLGLVT SEPLYQFVLL LQYVVPPAMN LGTITQLFGS GESECSVILF WSYALASVSL TVWPTFFMWL VA

Arabidopsis Description

PILS1Protein PIN-LIKES 1 [Source:UniProtKB/Swiss-Prot;Acc:F4HWB6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.