CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

plastid 1
mitochondrion 4
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29492	Canola	plasma membrane	78.66	98.17
Bra025857.1-P	Field mustard	plasma membrane	72.38	85.86
CDY45981	Canola	golgi, plasma membrane, vacuole	24.69	76.62
AT1G20925.1	Thale cress	plasma membrane	72.18	73.09
CDY20402	Canola	endoplasmic reticulum, plasma membrane, vacuole	58.37	72.09
CDX87589	Canola	golgi, plasma membrane, vacuole	58.58	71.98
CDX68094	Canola	endoplasmic reticulum, plasma membrane, vacuole	55.23	68.04
CDX85953	Canola	endoplasmic reticulum, plasma membrane, vacuole	51.88	67.95
TraesCS5D01G275200.1	Wheat	plasma membrane	37.87	58.58
PGSC0003DMT400025706	Potato	endoplasmic reticulum, plasma membrane, vacuole	49.37	57.99
Solyc04g082830.2.1	Tomato	plasma membrane	47.07	56.82
KRH38085	Soybean	extracellular	5.86	54.9
KRH07852	Soybean	golgi, plasma membrane, vacuole	12.76	53.04
VIT_04s0044g01870.t01	Wine grape	plasma membrane	42.05	52.89
VIT_04s0044g01890.t01	Wine grape	endoplasmic reticulum, extracellular	14.64	52.63
GSMUA_Achr3P03690_001	Banana	plasma membrane	46.03	52.13
KRH39386	Soybean	golgi, plasma membrane, vacuole	43.93	50.72
KRH76489	Soybean	endoplasmic reticulum, plasma membrane, vacuole	43.72	50.36
Solyc12g095750.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	44.14	50.36
KRH28961	Soybean	golgi, plasma membrane, vacuole	43.51	50.12
KRH34529	Soybean	golgi, plasma membrane	41.21	49.25
HORVU5Hr1G073630.3	Barley	golgi, plasma membrane, vacuole	42.05	48.91
KRH07859	Soybean	golgi, plasma membrane, vacuole	42.26	48.79
EER99100	Sorghum	golgi, plasma membrane, vacuole	42.26	48.79
VIT_04s0044g01860.t01	Wine grape	golgi, plasma membrane, vacuole	42.26	48.33
Os09t0491740-01	Rice	golgi, plasma membrane, vacuole	38.28	48.28
VIT_04s0044g01850.t01	Wine grape	golgi, plasma membrane, vacuole	42.05	48.09
KXG35918	Sorghum	plasma membrane	41.63	48.07
EER99101	Sorghum	golgi, plasma membrane, vacuole	41.63	48.07
VIT_04s0044g01880.t01	Wine grape	plastid	45.82	47.71
KRH66552	Soybean	plasma membrane	40.17	45.28
KRG92281	Soybean	plasma membrane	38.49	44.99
TraesCS5B01G267800.2	Wheat	golgi, plasma membrane, vacuole	34.94	44.3
TraesCS5A01G267300.1	Wheat	extracellular	22.8	44.13
PGSC0003DMT400075596	Potato	plasma membrane	18.83	43.9
KRH48800	Soybean	plasma membrane	37.45	42.82
CDY57767	Canola	plasma membrane	34.52	41.77
CDY55102	Canola	plasma membrane	34.52	41.77
CDX81425	Canola	plasma membrane	34.31	41.73
CDY18579	Canola	plasma membrane	34.1	41.37
CDY26812	Canola	plasma membrane	33.89	41.22
CDY30361	Canola	golgi, plasma membrane	33.89	41.22
CDY24342	Canola	plasma membrane	33.68	40.97
KRG92282	Soybean	plasma membrane	21.76	40.15
KRH48798	Soybean	plasma membrane	34.94	39.95
CDY20805	Canola	extracellular, plasma membrane	25.52	39.74
HORVU5Hr1G073670.1	Barley	cytosol	42.89	38.25
KRG89678	Soybean	plasma membrane	15.9	38.0
KRH07851	Soybean	plasma membrane	23.43	37.71
KRH34530	Soybean	cytosol, endoplasmic reticulum, plasma membrane	23.85	36.42
CDY57768	Canola	extracellular, plasma membrane, vacuole	9.83	35.07
CDY01222	Canola	golgi, plasma membrane, plastid	25.73	29.22
CDY70057	Canola	golgi, plasma membrane, plastid	25.52	28.84
CDY58937	Canola	cytosol, golgi, plasma membrane	25.94	28.77
CDY03621	Canola	cytosol, golgi, plasma membrane	25.94	28.77
CDX72776	Canola	plasma membrane	25.52	26.81
CDX96302	Canola	golgi, plasma membrane	25.73	26.8
Zm00001d024842_P002	Maize	plasma membrane	14.64	22.65

Protein Annotations

EnsemblPlants:CDY31514	EnsemblPlantsGene:GSBRNA2T00047819001	GO:A0A078H277	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:Mem_trans	PANTHER:PTHR31651	PANTHER:PTHR31651:SF6
PFAM:PF03547	ProteinID:CDY31514	ProteinID:CDY31514.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EF207A
UniProt:A0A078H277	MapMan:11.2.4.2	MapMan:24.2.5.2.2	:	:	:

Description

BnaC05g16230DBnaC05g16230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H277]

Coordinates

chrLK032273:+:454232..457281

Molecular Weight (calculated)

52240.1 Da

IEP (calculated)

8.861

GRAVY (calculated)

0.554

Length

478 amino acids

Sequence
(BLAST)

001: MPGPKQRRTL VHKNGLLPNS ILRRLLSSVA SNETTTCIST YEHTSCEKEF FKTKVPVVTY GGDATPLNDK YLENMGFIYH LHSLVISKLS SDETRMKLLD
101: LFITSSIPVG KILVITGIGF YLALDRVNIL NQDARKQLNN IVFYVFSPSL VASSLAETIT YESLVKMWFM PLNVVLTFII GSFLGWLVIK ITKPPYHLRG
201: IIVGCCAAGN LGNMPLIIIP AICNEKGSPF GDPETCEKYG LGYVALSMAI GSICIWTYVY NLMRVLARES PIIIGTSSTV PLIPTKVIQV EEQFGTWSKI
301: KQRVCSATEN INLGTIFAPS TIAALIALGV GLIPTLRKLL IGNTAPLRVI EDSVSLLGEG TIPLLTLIIG GNLLKGLRGS GMHKSVILGV VVVRYVLLPI
401: IGVLIVQGAH QLGLITSEPL YQFVLLLQYV VPPAMNLGTI TQLFGSGESE CSVILFWSYA LASVSLTLWP TFFMWLVA

Best Arabidopsis Sequence Match ( AT1G20925.1 )
(BLAST)

001: MSLTQSAKLH IIHQSIGKIT TRLYDTSPFH GDSHCKQRRV KDNCIQFNMN ISNVLKCYSE IESFSINQRI RRSISLFLSI LRSFYSMRMR LLDLFITSSI
101: PVAKILLITG IGFYLALDQV NILNHDARKQ LNNIVFYVFS PSLVASSLSE TITYESMVKM WFMPLNVLLT FIIGSFLGWI VIKITKPPSH LRGIIVGCCA
201: AGNLGNMPLI IIPAICNEKG SPFGDPESCE KFGLGYIALS MAIGAIYIWT YVYNLMRMLA NPAGETAINS TSSTMPLISP KVEVAEQVGT WGKVKQRVCS
301: VAEKINLRTI FAPSTIAALI ALAVGLNPLL RKLLVGNTAP LRVIEDSVSL LGDGAIPVLT LIVGGNLLNG LRGSGINKSV IMGVVVVRYL LLPILGVFIV
401: RGAHYLGLVT SEPLYQFVLL LQYVVPPAMN LGTITQLFGS GESECSVILF WSYALASVSL TVWPTFFMWL VA

Arabidopsis Description

PILS1Protein PIN-LIKES 1 [Source:UniProtKB/Swiss-Prot;Acc:F4HWB6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.