CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 1
golgi 2
extracellular 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plasma membrane
Any Predictor:	cytosol, golgi, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58937	Canola	cytosol, golgi, plasma membrane	99.07	99.07
Bra014265.1-P	Field mustard	plasma membrane	98.84	98.84
AT5G01990.1	Thale cress	golgi, plasma membrane, vacuole	89.1	89.1
CDY70057	Canola	golgi, plasma membrane, plastid	87.24	88.89
CDY01222	Canola	golgi, plasma membrane, plastid	86.54	88.6
VIT_08s0056g00310.t01	Wine grape	cytosol, golgi, plasma membrane	72.16	76.79
KRH40632	Soybean	plasma membrane	72.39	75.36
KRH00524	Soybean	plasma membrane	72.39	75.36
GSMUA_Achr3P09660_001	Banana	golgi, plasma membrane	64.04	72.63
PGSC0003DMT400071229	Potato	cytosol, golgi, plasma membrane	69.61	70.75
Solyc10g074790.1.1	Tomato	plasma membrane	68.91	70.05
GSMUA_Achr9P16830_001	Banana	plasma membrane	66.59	68.99
TraesCS4B01G172100.1	Wheat	golgi, plasma membrane, vacuole	62.18	65.53
EES01656	Sorghum	plasma membrane	65.2	64.9
TraesCS4A01G132600.1	Wheat	golgi, plasma membrane, vacuole	59.86	64.02
Zm00001d043083_P003	Maize	plasma membrane	64.27	63.97
TraesCS3B01G373500.1	Wheat	plasma membrane	64.04	63.89
TraesCS3D01G335100.1	Wheat	plasma membrane	63.81	63.66
TraesCS3A01G341400.1	Wheat	plasma membrane	63.81	63.66
Os01t0818000-01	Rice	plasma membrane	63.57	63.43
HORVU3Hr1G080640.5	Barley	plasma membrane	63.34	63.19
TraesCS4D01G174100.2	Wheat	golgi, plasma membrane, vacuole	61.48	62.8
Os05t0481900-01	Rice	golgi, plasma membrane, plastid	61.72	60.87
HORVU4Hr1G050910.5	Barley	golgi, plasma membrane, plastid	62.41	56.51
CDX72776	Canola	plasma membrane	37.12	35.16
CDX96302	Canola	golgi, plasma membrane	36.89	34.64
CDY29492	Canola	plasma membrane	28.31	31.85
CDX87589	Canola	golgi, plasma membrane, vacuole	27.61	30.59
CDY45981	Canola	golgi, plasma membrane, vacuole	10.9	30.52
CDY20402	Canola	endoplasmic reticulum, plasma membrane, vacuole	27.15	30.23
CDX68094	Canola	endoplasmic reticulum, plasma membrane, vacuole	26.91	29.9
CDY57767	Canola	plasma membrane	27.15	29.62
CDY55102	Canola	plasma membrane	27.15	29.62
CDY57768	Canola	extracellular, plasma membrane, vacuole	9.05	29.1
CDX85953	Canola	endoplasmic reticulum, plasma membrane, vacuole	24.59	29.04
CDX81425	Canola	plasma membrane	26.45	29.01
CDY18579	Canola	plasma membrane	26.45	28.93
CDY24342	Canola	plasma membrane	25.52	27.99
CDY26812	Canola	plasma membrane	25.52	27.99
CDY30361	Canola	golgi, plasma membrane	25.52	27.99
CDY20805	Canola	extracellular, plasma membrane	18.56	26.06
CDY31514	Canola	mitochondrion, plasma membrane	28.77	25.94

Protein Annotations

MapMan:11.2.4.2	MapMan:24.2.5.2.2	GO:A0A078EQY4	EnsemblPlants:CDY03621	ProteinID:CDY03621	ProteinID:CDY03621.1
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00116383001	InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31419	PANTHER:PTHR31419:SF1	TMHMM:TMhelix
UniParc:UPI0004EEBECA	SEG:seg	:	:	:	:

Description

BnaC03g68800D

Coordinates

chrLK031944:+:1006909..1009588

Molecular Weight (calculated)

46741.7 Da

IEP (calculated)

9.476

GRAVY (calculated)

0.683

Length

431 amino acids

Sequence
(BLAST)

001: MIARILADFM ESPAVAAAGD SVLGTIKIAV MPIAKVFTMC FLGLLMASKY VNILPPSGRK LLNGLVFSLL LPCLIFSQLG QAVTLQKMLQ WWFIPVNVVL
101: GTISGSLIGL LVATIVRPPY PYFKFTIIQI GVGNIGNVPL VLLAALCRDT SNPFGDSEKC SIDGTAYISF GQWVGAIILY TYVYQMLAPP PEGFDGEHDN
201: LPLKNLPLDS SAPEQVPLLT QNRTKDVSSI QVHLPVQTAE PRTRVVDSRK SKITQFFVYL YEKLKLKQII QPAIIASILA MVLGAIPFTK KLLFTNGAPL
301: FFFTDSCMIL GDAMIPCILL ALGGNLVNGP GSSRLGFKTT AAIIFGRLVL VPPVGLGIVT LADRLGFLPA GDKMFKFVLL LQHTMPTSVL SGAVANLRGC
401: GRESAAVLFW VHIFAIFSMA GWMVLYINIL F

Best Arabidopsis Sequence Match ( AT5G01990.1 )
(BLAST)

001: MIARILAALA DSMEMPVAAG GGSVLGTIKI AVMPIAKVFT MCFLGLLMAS KYVNILPPSG RKLLNGLVFS LLLPCLIFSQ LGQAVTLQKM LQWWFIPVNV
101: VLGTISGSII GFIVASIVRP PYPYFKFTII QIGVGNIGNV PLVLLAALCR DTSNPFGDSE KCSIDGTAYI SFGQWVGAII LYTYVYQMFA PPPEGFDAEE
201: ENLALKTLPV DAAPEQVPLL TQNFPKDFSP TQDLLPVQST EPRGRGVSRK GKIAQIFVFL YEKLKLKQIV QPAIVASILA MILGAIPFTK KLIFTNGAPL
301: FFFTDSCMIL GDAMIPCILL ALGGNLINGP GSSKLGFKTT AAIIIGRLVL VPPVGLGIVT VADKLGFLPA DDKMFRFVLL LQHTMPTSVL SGAVANLRGC
401: GRESAAVLFW VHIFAIFSMA GWMVLYINIL F

Arabidopsis Description

PILS6Protein PIN-LIKES 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN2]
SUBAcon: [golgi,plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.