Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030441.1-P | Field mustard | golgi, plasma membrane, plastid | 87.94 | 89.6 |
| CDY58937 | Canola | cytosol, golgi, plasma membrane | 89.56 | 89.56 |
| CDY01222 | Canola | golgi, plasma membrane, plastid | 87.47 | 89.55 |
| CDY70057 | Canola | golgi, plasma membrane, plastid | 87.7 | 89.36 |
| Bra014265.1-P | Field mustard | plasma membrane | 89.33 | 89.33 |
| CDY03621 | Canola | cytosol, golgi, plasma membrane | 89.1 | 89.1 |
| KRH40632 | Soybean | plasma membrane | 73.32 | 76.33 |
| KRH00524 | Soybean | plasma membrane | 73.32 | 76.33 |
| VIT_08s0056g00310.t01 | Wine grape | cytosol, golgi, plasma membrane | 71.23 | 75.8 |
| GSMUA_Achr3P09660_001 | Banana | golgi, plasma membrane | 62.41 | 70.79 |
| PGSC0003DMT400071229 | Potato | cytosol, golgi, plasma membrane | 69.61 | 70.75 |
| Solyc10g074790.1.1 | Tomato | plasma membrane | 69.14 | 70.28 |
| GSMUA_Achr9P16830_001 | Banana | plasma membrane | 65.43 | 67.79 |
| TraesCS4B01G172100.1 | Wheat | golgi, plasma membrane, vacuole | 60.32 | 63.57 |
| EES01656 | Sorghum | plasma membrane | 63.11 | 62.82 |
| TraesCS3B01G373500.1 | Wheat | plasma membrane | 62.88 | 62.73 |
| TraesCS3D01G335100.1 | Wheat | plasma membrane | 62.65 | 62.5 |
| TraesCS3A01G341400.1 | Wheat | plasma membrane | 62.65 | 62.5 |
| TraesCS4A01G132600.1 | Wheat | golgi, plasma membrane, vacuole | 58.24 | 62.28 |
| Zm00001d043083_P003 | Maize | plasma membrane | 62.18 | 61.89 |
| HORVU3Hr1G080640.5 | Barley | plasma membrane | 61.95 | 61.81 |
| Os01t0818000-01 | Rice | plasma membrane | 61.95 | 61.81 |
| TraesCS4D01G174100.2 | Wheat | golgi, plasma membrane, vacuole | 59.4 | 60.66 |
| Os05t0481900-01 | Rice | golgi, plasma membrane, plastid | 59.86 | 59.04 |
| HORVU4Hr1G050910.5 | Barley | golgi, plasma membrane, plastid | 60.09 | 54.41 |
| AT1G71090.1 | Thale cress | plasma membrane | 37.59 | 35.45 |
| AT1G76520.2 | Thale cress | plasma membrane | 26.91 | 29.74 |
| AT5G65980.1 | Thale cress | plasma membrane | 27.15 | 29.62 |
| AT2G17500.2 | Thale cress | plasma membrane | 25.75 | 28.03 |
| AT1G76530.1 | Thale cress | plasma membrane | 25.75 | 26.75 |
| AT1G20925.1 | Thale cress | plasma membrane | 28.54 | 26.06 |
Protein Annotations
| MapMan:11.2.4.2 | MapMan:24.2.5.2.2 | EntrezGene:830729 | UniProt:A0A178UER8 | ProteinID:AED90417.1 | ArrayExpress:AT5G01990 |
| EnsemblPlantsGene:AT5G01990 | RefSeq:AT5G01990 | TAIR:AT5G01990 | RefSeq:AT5G01990-TAIR-G | EnsemblPlants:AT5G01990.1 | TAIR:AT5G01990.1 |
| Unigene:At.33476 | ProteinID:CAB82972.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009734 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0055085 | InterPro:Mem_trans | RefSeq:NP_195819.1 | ProteinID:OAO92298.1 | PFAM:PF03547 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR31419 | PANTHER:PTHR31419:SF1 | UniProt:Q9LZN2 | TMHMM:TMhelix | UniParc:UPI00000A8706 | SEG:seg |
Description
PILS6Protein PIN-LIKES 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN2]
Coordinates
chr5:-:377231..379911
Molecular Weight (calculated)
46467.5 Da
IEP (calculated)
9.177
GRAVY (calculated)
0.731
Length
431 amino acids
Sequence
(BLAST)
(BLAST)
001: MIARILAALA DSMEMPVAAG GGSVLGTIKI AVMPIAKVFT MCFLGLLMAS KYVNILPPSG RKLLNGLVFS LLLPCLIFSQ LGQAVTLQKM LQWWFIPVNV
101: VLGTISGSII GFIVASIVRP PYPYFKFTII QIGVGNIGNV PLVLLAALCR DTSNPFGDSE KCSIDGTAYI SFGQWVGAII LYTYVYQMFA PPPEGFDAEE
201: ENLALKTLPV DAAPEQVPLL TQNFPKDFSP TQDLLPVQST EPRGRGVSRK GKIAQIFVFL YEKLKLKQIV QPAIVASILA MILGAIPFTK KLIFTNGAPL
301: FFFTDSCMIL GDAMIPCILL ALGGNLINGP GSSKLGFKTT AAIIIGRLVL VPPVGLGIVT VADKLGFLPA DDKMFRFVLL LQHTMPTSVL SGAVANLRGC
401: GRESAAVLFW VHIFAIFSMA GWMVLYINIL F
101: VLGTISGSII GFIVASIVRP PYPYFKFTII QIGVGNIGNV PLVLLAALCR DTSNPFGDSE KCSIDGTAYI SFGQWVGAII LYTYVYQMFA PPPEGFDAEE
201: ENLALKTLPV DAAPEQVPLL TQNFPKDFSP TQDLLPVQST EPRGRGVSRK GKIAQIFVFL YEKLKLKQIV QPAIVASILA MILGAIPFTK KLIFTNGAPL
301: FFFTDSCMIL GDAMIPCILL ALGGNLINGP GSSKLGFKTT AAIIIGRLVL VPPVGLGIVT VADKLGFLPA DDKMFRFVLL LQHTMPTSVL SGAVANLRGC
401: GRESAAVLFW VHIFAIFSMA GWMVLYINIL F
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.