CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, plastid

Predictor Summary:

nucleus 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, plastid
Any Predictor:	golgi, nucleus, plasma membrane, plastid
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70057	Canola	golgi, plasma membrane, plastid	96.91	96.45
AT5G01990.1	Thale cress	golgi, plasma membrane, vacuole	89.55	87.47
CDY58937	Canola	cytosol, golgi, plasma membrane	89.31	87.24
CDY03621	Canola	cytosol, golgi, plasma membrane	88.6	86.54
KRH40632	Soybean	plasma membrane	75.06	76.33
KRH00524	Soybean	plasma membrane	75.06	76.33
VIT_08s0056g00310.t01	Wine grape	cytosol, golgi, plasma membrane	73.4	76.3
GSMUA_Achr3P09660_001	Banana	golgi, plasma membrane	63.42	70.26
PGSC0003DMT400071229	Potato	cytosol, golgi, plasma membrane	69.83	69.34
Solyc10g074790.1.1	Tomato	plasma membrane	69.6	69.1
GSMUA_Achr9P16830_001	Banana	plasma membrane	66.51	67.31
TraesCS4B01G172100.1	Wheat	golgi, plasma membrane, vacuole	62.0	63.81
TraesCS3B01G373500.1	Wheat	plasma membrane	65.08	63.43
TraesCS3D01G335100.1	Wheat	plasma membrane	64.85	63.19
TraesCS3A01G341400.1	Wheat	plasma membrane	64.85	63.19
EES01656	Sorghum	plasma membrane	64.61	62.82
TraesCS4A01G132600.1	Wheat	golgi, plasma membrane, vacuole	59.86	62.53
HORVU3Hr1G080640.5	Barley	plasma membrane	64.13	62.5
Os01t0818000-01	Rice	plasma membrane	63.66	62.04
Zm00001d043083_P003	Maize	plasma membrane	63.66	61.89
TraesCS4D01G174100.2	Wheat	golgi, plasma membrane, vacuole	61.05	60.9
Os05t0481900-01	Rice	golgi, plasma membrane, plastid	61.28	59.04
HORVU4Hr1G050910.5	Barley	golgi, plasma membrane, plastid	62.0	54.83
CDX72776	Canola	plasma membrane	37.53	34.73
CDX96302	Canola	golgi, plasma membrane	37.05	33.99
CDY29492	Canola	plasma membrane	28.74	31.59
CDY45981	Canola	golgi, plasma membrane, vacuole	11.16	30.52
CDX87589	Canola	golgi, plasma membrane, vacuole	28.03	30.33
CDY20402	Canola	endoplasmic reticulum, plasma membrane, vacuole	27.79	30.23
CDX68094	Canola	endoplasmic reticulum, plasma membrane, vacuole	27.79	30.15
CDY55102	Canola	plasma membrane	27.79	29.62
CDY57767	Canola	plasma membrane	27.79	29.62
CDX81425	Canola	plasma membrane	27.55	29.52
CDY18579	Canola	plasma membrane	27.55	29.44
CDX85953	Canola	endoplasmic reticulum, plasma membrane, vacuole	25.18	29.04
CDY57768	Canola	extracellular, plasma membrane, vacuole	9.03	28.36
CDY24342	Canola	plasma membrane	26.37	28.24
CDY26812	Canola	plasma membrane	26.13	27.99
CDY30361	Canola	golgi, plasma membrane	26.13	27.99
CDY20805	Canola	extracellular, plasma membrane	19.24	26.38
CDY31514	Canola	mitochondrion, plasma membrane	29.22	25.73

Protein Annotations

EnsemblPlants:CDY01222	EnsemblPlantsGene:GSBRNA2T00111344001	GO:A0A078EJ98	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:Mem_trans	PANTHER:PTHR31419	PANTHER:PTHR31419:SF1
PFAM:PF03547	ProteinID:CDY01222	ProteinID:CDY01222.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EEE69A
MapMan:11.2.4.2	MapMan:24.2.5.2.2	:	:	:	:

Description

BnaC05g25100D

Coordinates

chrLK031925:-:184172..186127

Molecular Weight (calculated)

45772.5 Da

IEP (calculated)

8.987

GRAVY (calculated)

0.655

Length

421 amino acids

Sequence
(BLAST)

001: MITRILSDLM DMPTAVAAGE SVLGTIKIAV MPIAKVFTMC FLGLLMASKY VNILPPSGRK LLNGLVFTLL LPCLIFSQLG QAVTLHKMLQ WWFIPVNVVL
101: GTISGSLIGF LVATIIRPPY PYFKFTIIQI GVGNIGNVPL VLLAALCRDK SNPFGDSEKC SIDGTAYISF GQWVGAIILY TYVYQMFTPP PEGFDGEEEN
201: LPLKNVQADA ASPEQVPLLT QNHPKDTPPA QARLPVGRVD SKITQIFVYL YEKLKLKQII QPAIISSILA MILGAIPFTK KLIFTNNSPL FFFTDSCMIL
301: GDAMIPCILL ALGGNLINGP GSSKLGFKTT AAIIVGRLVL VPPAGLGIVT LADKLGFLPT DDKMFRFVLL LQHTMPTSVL SGAVANLRGC GRESAAVLFW
401: VHIFAIFSMA GWMVLYINIL F

Best Arabidopsis Sequence Match ( AT5G01990.1 )
(BLAST)

001: MIARILAALA DSMEMPVAAG GGSVLGTIKI AVMPIAKVFT MCFLGLLMAS KYVNILPPSG RKLLNGLVFS LLLPCLIFSQ LGQAVTLQKM LQWWFIPVNV
101: VLGTISGSII GFIVASIVRP PYPYFKFTII QIGVGNIGNV PLVLLAALCR DTSNPFGDSE KCSIDGTAYI SFGQWVGAII LYTYVYQMFA PPPEGFDAEE
201: ENLALKTLPV DAAPEQVPLL TQNFPKDFSP TQDLLPVQST EPRGRGVSRK GKIAQIFVFL YEKLKLKQIV QPAIVASILA MILGAIPFTK KLIFTNGAPL
301: FFFTDSCMIL GDAMIPCILL ALGGNLINGP GSSKLGFKTT AAIIIGRLVL VPPVGLGIVT VADKLGFLPA DDKMFRFVLL LQHTMPTSVL SGAVANLRGC
401: GRESAAVLFW VHIFAIFSMA GWMVLYINIL F

Arabidopsis Description

PILS6Protein PIN-LIKES 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN2]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.