CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	golgi, plasma membrane, plastid
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96302	Canola	golgi, plasma membrane	98.24	97.39
AT1G71090.1	Thale cress	plasma membrane	87.91	87.53
VIT_01s0011g04640.t01	Wine grape	plasma membrane	68.79	71.79
KRH38174	Soybean	plasma membrane	68.79	71.14
KRG94282	Soybean	plasma membrane	68.79	70.34
GSMUA_AchrUn_...	Banana	plasma membrane	59.12	68.62
GSMUA_Achr11P...	Banana	plasma membrane	66.15	67.95
TraesCS3D01G530400.1	Wheat	plasma membrane	64.84	65.85
TraesCS3B01G592500.1	Wheat	plasma membrane	64.84	65.85
TraesCS3A01G525200.1	Wheat	plasma membrane	64.4	65.4
EES07131	Sorghum	golgi, plasma membrane	64.84	65.27
Zm00001d051044_P001	Maize	golgi, plasma membrane, vacuole	64.4	64.97
Os08t0191000-01	Rice	golgi, plasma membrane, plastid	64.84	64.84
HORVU3Hr1G114270.1	Barley	plasma membrane	64.4	64.68
HORVU0Hr1G031980.1	Barley	golgi, plasma membrane	64.4	63.42
CDY70057	Canola	golgi, plasma membrane, plastid	35.38	38.06
CDY01222	Canola	golgi, plasma membrane, plastid	34.73	37.53
CDY03621	Canola	cytosol, golgi, plasma membrane	35.16	37.12
CDY58937	Canola	cytosol, golgi, plasma membrane	34.95	36.89
CDY45981	Canola	golgi, plasma membrane, vacuole	12.09	35.71
CDY20402	Canola	endoplasmic reticulum, plasma membrane, vacuole	27.91	32.82
CDY29492	Canola	plasma membrane	26.81	31.85
CDX87589	Canola	golgi, plasma membrane, vacuole	26.81	31.36
CDX68094	Canola	endoplasmic reticulum, plasma membrane, vacuole	26.59	31.19
CDY57767	Canola	plasma membrane	25.49	29.37
CDY55102	Canola	plasma membrane	25.49	29.37
CDX85953	Canola	endoplasmic reticulum, plasma membrane, vacuole	23.3	29.04
CDY57768	Canola	extracellular, plasma membrane, vacuole	8.35	28.36
CDX81425	Canola	plasma membrane	24.18	27.99
CDY18579	Canola	plasma membrane	23.96	27.66
CDY24342	Canola	plasma membrane	23.52	27.23
CDY30361	Canola	golgi, plasma membrane	22.42	25.95
CDY26812	Canola	plasma membrane	22.42	25.95
CDY31514	Canola	mitochondrion, plasma membrane	26.81	25.52
CDY20805	Canola	extracellular, plasma membrane	16.92	25.08

Protein Annotations

EnsemblPlants:CDX72776	EnsemblPlantsGene:GSBRNA2T00103158001	GO:A0A078C6Q6	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:Mem_trans	PANTHER:PTHR31419	PANTHER:PTHR31419:SF7
PFAM:PF03547	ProteinID:CDX72776	ProteinID:CDX72776.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EB9299
MapMan:11.2.4.2	MapMan:24.2.5.2.2	:	:	:	:

Description

BnaC06g32240D

Coordinates

chrLK031797:+:190558..192218

Molecular Weight (calculated)

49656.5 Da

IEP (calculated)

5.924

GRAVY (calculated)

0.598

Length

455 amino acids

Sequence
(BLAST)

001: MSGNSVSSRV EDILSGIVPL MKLISLTVIG LLLAHPKTQL VPRATFRLLS KLVFALFLPC LIFTELGESI TLDNILRWWF IPVNVLLSTI IGSFIGYIVV
101: LICRPPPEFT RVTIVMTAFG NTGNLLLAIV SSVCHSKNNP FGSGCHSRGV SYVSFAQWVA VILVYTVVYH MMEPPLEYYE VVEDEGGVEI EEIAVANSND
201: VSRPLLVEAE WPGIEEKETE HCKTPFIARV FNSISSYSQT SFPEVVDLMG ETGGESSSPR SLQCLAEPRV IRRMRVVAEQ TPVKHILQPP TIASLLAIVV
301: GSVPQLKNIV FGYEAPLSFI TDSLNIMASA MVPSVMLVLG GMLSEGPRES TLGLRTTVGI TVARLLVLPL VGIGIVMSAD KLGLISPDPM FKFVLLLQYS
401: TPSAILLGAI ASLRGYAVRE ASALLFWQHV FALLSLTFYI IVFFKLTVDN VQGVP

Best Arabidopsis Sequence Match ( AT1G71090.1 )
(BLAST)

001: MSGFSSGNVN SRVVDILSGV VPLLKLICLT VIGLLLAHPK TQLVPRATFR LLSKLVFALF LPCLIFTELG ESITLDNIVQ WWFIPVNVLL SAVVGSLIGY
101: LVVLICRPPP EFNRFTIVMT AFGNTGNLLL AIVSSVCHTK TNPFGPNCNS RGVSYVSFAQ WVAVILVYTV VYHMMEPPLE YYEVVEEEGV EIEEINVENH
201: DASRPLLVEA EWPGIEDKET EHCKTPFIAR VFNSISSFSQ TSFPEVDLGG EYGGESSSPR SIQCLAEPRV MRRIRVVAEQ TPVKHILQPP TIASLLAIII
301: GSVPQLKSVV FGYDAPLSFI TDSLNIMGSA MVPSVMLVLG GMLSEGPNES TLGLRTTIGI SVARLLVLPL VGIGIVMSAD KLGLISSADP MFKFVLLLQY
401: STPSAILLGA IASLRGYAVR EASALLFWQH IFALLSLTFY IVIFFKLTVE TTVQGMQ

Arabidopsis Description

PILS2Protein PIN-LIKES 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C999]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.