Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003716.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 96.71 | 90.98 |
| CDX68094 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 96.71 | 90.98 |
| CDY45981 | Canola | golgi, plasma membrane, vacuole | 37.53 | 88.96 |
| CDX87589 | Canola | golgi, plasma membrane, vacuole | 89.04 | 83.55 |
| CDY20402 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 86.85 | 81.91 |
| AT1G76520.2 | Thale cress | plasma membrane | 85.21 | 79.74 |
| AT1G76530.1 | Thale cress | plasma membrane | 78.63 | 69.16 |
| CDY29492 | Canola | plasma membrane | 68.22 | 65.01 |
| KRH38085 | Soybean | extracellular | 8.77 | 62.75 |
| KRH07852 | Soybean | golgi, plasma membrane, vacuole | 16.44 | 52.17 |
| CDY31514 | Canola | mitochondrion, plasma membrane | 67.95 | 51.88 |
| PGSC0003DMT400025706 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 54.79 | 49.14 |
| Solyc04g082830.2.1 | Tomato | plasma membrane | 52.88 | 48.74 |
| TraesCS5D01G275200.1 | Wheat | plasma membrane | 40.82 | 48.22 |
| KRH76489 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 53.42 | 46.99 |
| KRH28961 | Soybean | golgi, plasma membrane, vacuole | 53.15 | 46.75 |
| VIT_04s0044g01870.t01 | Wine grape | plasma membrane | 47.95 | 46.05 |
| KRH34529 | Soybean | golgi, plasma membrane | 49.32 | 45.0 |
| KRH39386 | Soybean | golgi, plasma membrane, vacuole | 50.68 | 44.69 |
| KRH07859 | Soybean | golgi, plasma membrane, vacuole | 50.14 | 44.2 |
| Solyc12g095750.1.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 50.68 | 44.15 |
| GSMUA_Achr3P03690_001 | Banana | plasma membrane | 50.68 | 43.84 |
| VIT_04s0044g01860.t01 | Wine grape | golgi, plasma membrane, vacuole | 49.32 | 43.06 |
| EER99100 | Sorghum | golgi, plasma membrane, vacuole | 48.77 | 43.0 |
| EER99101 | Sorghum | golgi, plasma membrane, vacuole | 48.49 | 42.75 |
| VIT_04s0044g01850.t01 | Wine grape | golgi, plasma membrane, vacuole | 48.49 | 42.34 |
| HORVU5Hr1G073630.3 | Barley | golgi, plasma membrane, vacuole | 47.67 | 42.34 |
| Os09t0491740-01 | Rice | golgi, plasma membrane, vacuole | 43.29 | 41.69 |
| KRG92281 | Soybean | plasma membrane | 46.3 | 41.32 |
| PGSC0003DMT400075596 | Potato | plasma membrane | 23.01 | 40.98 |
| KXG35918 | Sorghum | plasma membrane | 46.3 | 40.82 |
| VIT_04s0044g01880.t01 | Wine grape | plastid | 51.23 | 40.74 |
| KRH66552 | Soybean | plasma membrane | 47.12 | 40.57 |
| TraesCS5B01G267800.2 | Wheat | golgi, plasma membrane, vacuole | 39.73 | 38.46 |
| VIT_04s0044g01890.t01 | Wine grape | endoplasmic reticulum, extracellular | 13.97 | 38.35 |
| CDY55102 | Canola | plasma membrane | 39.18 | 36.2 |
| CDY57767 | Canola | plasma membrane | 39.18 | 36.2 |
| TraesCS5A01G267300.1 | Wheat | extracellular | 24.38 | 36.03 |
| KRG92282 | Soybean | plasma membrane | 25.48 | 35.91 |
| CDY26812 | Canola | plasma membrane | 38.63 | 35.88 |
| CDX81425 | Canola | plasma membrane | 38.63 | 35.88 |
| CDY30361 | Canola | golgi, plasma membrane | 38.63 | 35.88 |
| CDY18579 | Canola | plasma membrane | 38.63 | 35.79 |
| KRH48800 | Soybean | plasma membrane | 40.82 | 35.65 |
| CDY24342 | Canola | plasma membrane | 38.36 | 35.62 |
| KRH34530 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 30.14 | 35.14 |
| KRH48798 | Soybean | plasma membrane | 40.0 | 34.93 |
| CDY20805 | Canola | extracellular, plasma membrane | 27.95 | 33.22 |
| KRG89678 | Soybean | plasma membrane | 18.08 | 33.0 |
| CDY57768 | Canola | extracellular, plasma membrane, vacuole | 12.05 | 32.84 |
| HORVU5Hr1G073670.1 | Barley | cytosol | 47.67 | 32.46 |
| KRH07851 | Soybean | plasma membrane | 26.03 | 31.99 |
| CDY01222 | Canola | golgi, plasma membrane, plastid | 29.04 | 25.18 |
| CDY70057 | Canola | golgi, plasma membrane, plastid | 29.04 | 25.06 |
| CDY03621 | Canola | cytosol, golgi, plasma membrane | 29.04 | 24.59 |
| CDY58937 | Canola | cytosol, golgi, plasma membrane | 28.77 | 24.36 |
| CDX72776 | Canola | plasma membrane | 29.04 | 23.3 |
| CDX96302 | Canola | golgi, plasma membrane | 28.77 | 22.88 |
| Zm00001d024842_P002 | Maize | plasma membrane | 14.52 | 17.15 |
Protein Annotations
| EnsemblPlants:CDX85953 | EnsemblPlantsGene:GSBRNA2T00143798001 | GO:A0A078DF71 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:Mem_trans | PANTHER:PTHR31651 | PANTHER:PTHR31651:SF6 |
| PFAM:PF03547 | ProteinID:CDX85953 | ProteinID:CDX85953.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EC32D3 |
| MapMan:11.2.4.2 | MapMan:24.2.5.2.2 | : | : | : | : |
Description
BnaC06g21810D
Coordinates
chrLK031843:+:1084940..1086874
Molecular Weight (calculated)
39958.0 Da
IEP (calculated)
8.645
GRAVY (calculated)
0.619
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKLLHLFIT SSKPVVEILL ITSVGLYMAL DGVNLLGPDA RKYLNDIVFY VFNPSLVGSR LADSVTYESL VKMWFMPINL LLTFIIGSLL GWIVILITKP
101: PSHLRGLIVG CCDADPENCN KYGMGYVALS MAMGSVYIWT YVYNLMRVLS NSPIETQPSI ESSCKVPLIS SKEEEEENHK VGRWDRFKRR MVSLSEKVNL
201: STIFTPTTIA AIIALVIGLI NPVRKLIIGN VAPLGVLQDS VTLVGDGAIP ATTLIIGGNL LKGMRSSGMK RSSIIGVLVA RYILLPISGV LIVRGAYKLD
301: LITSEPLYQF VLLIQYAVPP AMSLGTITQL FGAGESECSV VMLWAYGLAS VSLTAWPTFF MWLVA
101: PSHLRGLIVG CCDADPENCN KYGMGYVALS MAMGSVYIWT YVYNLMRVLS NSPIETQPSI ESSCKVPLIS SKEEEEENHK VGRWDRFKRR MVSLSEKVNL
201: STIFTPTTIA AIIALVIGLI NPVRKLIIGN VAPLGVLQDS VTLVGDGAIP ATTLIIGGNL LKGMRSSGMK RSSIIGVLVA RYILLPISGV LIVRGAYKLD
301: LITSEPLYQF VLLIQYAVPP AMSLGTITQL FGAGESECSV VMLWAYGLAS VSLTAWPTFF MWLVA
001: MVKLLELFIT SSKPVVEILL ITSVGFYMAL DGVNLLGHDA RKYLNNIVFY VFSPSLIGSR LADSVTYESL VKMWFMPVNV LLTFIIGSLL GWIVIVITKP
101: PSHLRGLILG CCAAGNLGNM PLIIIPAVCK EKGGPFGDPE SCQKYGMGYV ALSMAMGSIY IWTYVYNLMR VLSNSPVETP PSVESNYDSY KVPLISSKEE
201: ENNQKAGRWE KVKRRLVSLS QKVNLKTIFA PSTIAAMIAL VIGLITPLRK LIIGTEAPLR VLQDSVTLVG DGAVPAMTMI IGGNLLKGLR SSGMKMSSII
301: GVLVARYVLL PMSGVLIVRG AYKLDLVTSE PLYQFVLLLQ YAVPPAMNLG TITQLFGTGE SECSVIMLWT YSLASIALTV WPTFFMWLVA
101: PSHLRGLILG CCAAGNLGNM PLIIIPAVCK EKGGPFGDPE SCQKYGMGYV ALSMAMGSIY IWTYVYNLMR VLSNSPVETP PSVESNYDSY KVPLISSKEE
201: ENNQKAGRWE KVKRRLVSLS QKVNLKTIFA PSTIAAMIAL VIGLITPLRK LIIGTEAPLR VLQDSVTLVG DGAVPAMTMI IGGNLLKGLR SSGMKMSSII
301: GVLVARYVLL PMSGVLIVRG AYKLDLVTSE PLYQFVLLLQ YAVPPAMNLG TITQLFGTGE SECSVIMLWT YSLASIALTV WPTFFMWLVA
Arabidopsis Description
PILS3Protein PIN-LIKES 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.