Factsheet for VIT_04s0044g01850.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 7
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0044g01860.t01	Wine grape	golgi, plasma membrane, vacuole	77.99	77.99
Solyc02g037550.2.1	Tomato	plasma membrane	54.55	57.58
PGSC0003DMT400046054	Potato	plasma membrane	54.55	57.58
CDY45981	Canola	golgi, plasma membrane, vacuole	21.05	57.14
TraesCS5D01G275200.1	Wheat	plasma membrane	42.11	56.96
VIT_04s0044g01870.t01	Wine grape	plasma membrane	51.44	56.58
KRH07852	Soybean	golgi, plasma membrane, vacuole	15.55	56.52
VIT_04s0044g01890.t01	Wine grape	endoplasmic reticulum, extracellular	16.75	52.63
CDY29492	Canola	plasma membrane	48.09	52.48
GSMUA_Achr3P03690_001	Banana	plasma membrane	51.44	50.95
Solyc03g031990.2.1	Tomato	golgi, plasma membrane, vacuole	50.48	50.84
HORVU5Hr1G073630.3	Barley	golgi, plasma membrane, vacuole	49.52	50.37
PGSC0003DMT400048072	Potato	plasma membrane	49.76	50.12
AT1G76520.2	Thale cress	plasma membrane	46.17	49.49
Bra015736.1-P	Field mustard	golgi, plasma membrane, vacuole	45.93	49.36
CDX87589	Canola	golgi, plasma membrane, vacuole	45.69	49.1
CDY20402	Canola	endoplasmic reticulum, plasma membrane, vacuole	45.45	49.1
EER99100	Sorghum	golgi, plasma membrane, vacuole	48.56	49.03
Bra003716.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	45.22	48.71
CDX68094	Canola	endoplasmic reticulum, plasma membrane, vacuole	45.22	48.71
CDX85953	Canola	endoplasmic reticulum, plasma membrane, vacuole	42.34	48.49
Bra008264.1-P	Field mustard	golgi, plasma membrane, vacuole	45.69	47.99
EER99101	Sorghum	golgi, plasma membrane, vacuole	47.37	47.83
Os09t0491740-01	Rice	golgi, plasma membrane, vacuole	43.3	47.76
KXG35918	Sorghum	plasma membrane	46.89	47.34
VIT_04s0044g01880.t01	Wine grape	plastid	50.0	45.53
Bra025857.1-P	Field mustard	plasma membrane	43.78	45.41
AT1G76530.1	Thale cress	plasma membrane	44.5	44.82
TraesCS5A01G267300.1	Wheat	extracellular	26.08	44.13
TraesCS5B01G267800.2	Wheat	golgi, plasma membrane, vacuole	39.71	44.03
KRH07851	Soybean	plasma membrane	30.62	43.1
AT1G20925.1	Thale cress	plasma membrane	48.33	42.8
CDY31514	Canola	mitochondrion, plasma membrane	48.09	42.05
VIT_07s0031g02200.t01	Wine grape	plasma membrane	41.87	41.57
HORVU5Hr1G073670.1	Barley	cytosol	49.52	38.62
VIT_08s0056g00310.t01	Wine grape	cytosol, golgi, plasma membrane	27.75	28.64
VIT_01s0011g04640.t01	Wine grape	plasma membrane	27.51	26.38
VIT_14s0006g01970.t01	Wine grape	golgi, mitochondrion, plasma membrane, plastid	27.27	23.75
VIT_18s0001g00940.t01	Wine grape	plasma membrane	21.29	23.73
VIT_18s0001g00260.t01	Wine grape	plasma membrane	16.51	22.4

Protein Annotations

EntrezGene:100253302	wikigene:100253302	MapMan:11.2.4.2	MapMan:24.2.5.2.2	ProteinID:CCB60380	ProteinID:CCB60380.1
UniProt:F6I0B4	EMBL:FN596506	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	EntrezGene:LOC100253302	wikigene:LOC100253302	InterPro:Mem_trans	PFAM:PF03547
PANTHER:PTHR31651	PANTHER:PTHR31651:SF6	TMHMM:TMhelix	UniParc:UPI00015CC5A6	ArrayExpress:VIT_04s0044g01850	EnsemblPlantsGene:VIT_04s0044g01850
EnsemblPlants:VIT_04s0044g01850.t01	unigene:Vvi.2730	RefSeq:XP_002264606	RefSeq:XP_002264606.1	RefSeq:XP_003631924	RefSeq:XP_003631924.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:23647426..23652709

Molecular Weight (calculated)

45367.1 Da

IEP (calculated)

5.953

GRAVY (calculated)

0.645

Length

418 amino acids

Sequence
(BLAST)

001: MGFWSLFVTA LMPILKVLVV TGIGLFIALE RIDLLGPTAR HHLNTLVFYI FYPALVASNL ADTVTASSLA TMWFMPVNIL LTFIIGSALG WILIKITRPP
101: QHLHALILGC CSAGNMGNLF FIIIPAICEE SDNPFGSSDC STDGDAYASL SSALGAIGVW TYVYMIMRMS ATKCKGEINL CNSTTSVRTS REALEISSDC
201: CTEALLPPRD SPRSGNWSDE EELPHDGSEE KSEVPFSEKI KQKVKIFMEK TNFKQVFTPS TIGVIFGFFI GLIPPIRKLI IGDSAPLRVI ESSATLLGEA
301: AIPSTTLIMG ANLLSGLKGS DVSIVVILGI VAVRYIFLPL LGVVVVKAAT HFGLVGSNLL FQFVLMLQYA VPPAMGTGVI CQLFQFGQSE CSVIMLWTYA
401: VAGFALTLWS TFFMWLVS

Best Arabidopsis Sequence Match ( AT1G20925.1 )
(BLAST)

001: MSLTQSAKLH IIHQSIGKIT TRLYDTSPFH GDSHCKQRRV KDNCIQFNMN ISNVLKCYSE IESFSINQRI RRSISLFLSI LRSFYSMRMR LLDLFITSSI
101: PVAKILLITG IGFYLALDQV NILNHDARKQ LNNIVFYVFS PSLVASSLSE TITYESMVKM WFMPLNVLLT FIIGSFLGWI VIKITKPPSH LRGIIVGCCA
201: AGNLGNMPLI IIPAICNEKG SPFGDPESCE KFGLGYIALS MAIGAIYIWT YVYNLMRMLA NPAGETAINS TSSTMPLISP KVEVAEQVGT WGKVKQRVCS
301: VAEKINLRTI FAPSTIAALI ALAVGLNPLL RKLLVGNTAP LRVIEDSVSL LGDGAIPVLT LIVGGNLLNG LRGSGINKSV IMGVVVVRYL LLPILGVFIV
401: RGAHYLGLVT SEPLYQFVLL LQYVVPPAMN LGTITQLFGS GESECSVILF WSYALASVSL TVWPTFFMWL VA

Arabidopsis Description

PILS1Protein PIN-LIKES 1 [Source:UniProtKB/Swiss-Prot;Acc:F4HWB6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.