Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 7
- golgi 6
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400048072 | Potato | plasma membrane | 96.63 | 96.63 |
| Solyc02g037550.2.1 | Tomato | plasma membrane | 52.05 | 54.55 |
| KRH07852 | Soybean | golgi, plasma membrane, vacuole | 14.22 | 51.3 |
| VIT_04s0044g01860.t01 | Wine grape | golgi, plasma membrane, vacuole | 51.08 | 50.72 |
| TraesCS5D01G275200.1 | Wheat | plasma membrane | 37.59 | 50.49 |
| VIT_04s0044g01850.t01 | Wine grape | golgi, plasma membrane, vacuole | 50.84 | 50.48 |
| Solyc04g082830.2.1 | Tomato | plasma membrane | 46.51 | 48.74 |
| EER99100 | Sorghum | golgi, plasma membrane, vacuole | 45.54 | 45.65 |
| KXG35918 | Sorghum | plasma membrane | 45.06 | 45.17 |
| EER99101 | Sorghum | golgi, plasma membrane, vacuole | 44.82 | 44.93 |
| GSMUA_Achr3P03690_001 | Banana | plasma membrane | 45.3 | 44.55 |
| HORVU5Hr1G073630.3 | Barley | golgi, plasma membrane, vacuole | 43.86 | 44.28 |
| Solyc12g095750.1.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 44.1 | 43.68 |
| Os09t0491740-01 | Rice | golgi, plasma membrane, vacuole | 38.07 | 41.69 |
| TraesCS5B01G267800.2 | Wheat | golgi, plasma membrane, vacuole | 36.87 | 40.58 |
| TraesCS5A01G267300.1 | Wheat | extracellular | 23.61 | 39.68 |
| Solyc02g082450.2.1 | Tomato | nucleus | 38.07 | 39.01 |
| KRH07851 | Soybean | plasma membrane | 26.99 | 37.71 |
| Solyc03g032080.2.1 | Tomato | golgi, plasma membrane | 20.0 | 34.16 |
| HORVU5Hr1G073670.1 | Barley | cytosol | 43.86 | 33.96 |
| Solyc10g074790.1.1 | Tomato | plasma membrane | 27.95 | 27.36 |
| Solyc02g091240.1.1 | Tomato | golgi, plasma membrane | 26.51 | 24.34 |
| Zm00001d024842_P002 | Maize | plasma membrane | 17.35 | 23.3 |
Protein Annotations
| EnsemblPlants:Solyc03g031990.2.1 | EnsemblPlantsGene:Solyc03g031990.2 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0055085 | InterPro:Mem_trans | PANTHER:PTHR31651 | PANTHER:PTHR31651:SF6 | PFAM:PF03547 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0002767636 | UniProt:K4BFH0 | MapMan:11.2.4.2 | MapMan:24.2.5.2.2 |
Description
No Description!
Coordinates
chr3:-:4479039..4483950
Molecular Weight (calculated)
44665.4 Da
IEP (calculated)
7.147
GRAVY (calculated)
0.738
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MNIEELFFLA LMPVLKTLLI AVVGLYLAMD HVSILTAEGR HHLNNLVFYV FFPSLCASGL ISSSTATGLF SLWFVPVSIL ITFLVGSALG WILVKITRTP
101: QHLHGLVIGC CAGGNMGNLP VIIIPAICAE KNNPFGDSST CSINGMGYVS LSMGIGAIGI WSYVYNIIRA YGKRDDGDVS AYSKLRENSH SETSRRALDS
201: TTQTLLPSSN SKGAEVSAEL ISQGSIDETK VSVPAIIEKK VKSLVEYIDL SVLFRPPTIA TVIGIIIASI SPIQNFMVGS GAPLRFVESS VVLLGEAAIP
301: SMTIIMGANL LRGFKRSGVG IWLLFGIIVV RFVILPIIGV AVITVAKNLG MVGTDPLYHF VLLLQYAVPP AMAIGTITQL FEIGETECSV IMFWNYAVAA
401: VALTLWSTYF MYILS
101: QHLHGLVIGC CAGGNMGNLP VIIIPAICAE KNNPFGDSST CSINGMGYVS LSMGIGAIGI WSYVYNIIRA YGKRDDGDVS AYSKLRENSH SETSRRALDS
201: TTQTLLPSSN SKGAEVSAEL ISQGSIDETK VSVPAIIEKK VKSLVEYIDL SVLFRPPTIA TVIGIIIASI SPIQNFMVGS GAPLRFVESS VVLLGEAAIP
301: SMTIIMGANL LRGFKRSGVG IWLLFGIIVV RFVILPIIGV AVITVAKNLG MVGTDPLYHF VLLLQYAVPP AMAIGTITQL FEIGETECSV IMFWNYAVAA
401: VALTLWSTYF MYILS
001: MSLTQSAKLH IIHQSIGKIT TRLYDTSPFH GDSHCKQRRV KDNCIQFNMN ISNVLKCYSE IESFSINQRI RRSISLFLSI LRSFYSMRMR LLDLFITSSI
101: PVAKILLITG IGFYLALDQV NILNHDARKQ LNNIVFYVFS PSLVASSLSE TITYESMVKM WFMPLNVLLT FIIGSFLGWI VIKITKPPSH LRGIIVGCCA
201: AGNLGNMPLI IIPAICNEKG SPFGDPESCE KFGLGYIALS MAIGAIYIWT YVYNLMRMLA NPAGETAINS TSSTMPLISP KVEVAEQVGT WGKVKQRVCS
301: VAEKINLRTI FAPSTIAALI ALAVGLNPLL RKLLVGNTAP LRVIEDSVSL LGDGAIPVLT LIVGGNLLNG LRGSGINKSV IMGVVVVRYL LLPILGVFIV
401: RGAHYLGLVT SEPLYQFVLL LQYVVPPAMN LGTITQLFGS GESECSVILF WSYALASVSL TVWPTFFMWL VA
101: PVAKILLITG IGFYLALDQV NILNHDARKQ LNNIVFYVFS PSLVASSLSE TITYESMVKM WFMPLNVLLT FIIGSFLGWI VIKITKPPSH LRGIIVGCCA
201: AGNLGNMPLI IIPAICNEKG SPFGDPESCE KFGLGYIALS MAIGAIYIWT YVYNLMRMLA NPAGETAINS TSSTMPLISP KVEVAEQVGT WGKVKQRVCS
301: VAEKINLRTI FAPSTIAALI ALAVGLNPLL RKLLVGNTAP LRVIEDSVSL LGDGAIPVLT LIVGGNLLNG LRGSGINKSV IMGVVVVRYL LLPILGVFIV
401: RGAHYLGLVT SEPLYQFVLL LQYVVPPAMN LGTITQLFGS GESECSVILF WSYALASVSL TVWPTFFMWL VA
Arabidopsis Description
PILS1Protein PIN-LIKES 1 [Source:UniProtKB/Swiss-Prot;Acc:F4HWB6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.