Factsheet for Solyc02g082450.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035511	Potato	plasma membrane	97.04	97.04
Solyc03g032080.2.1	Tomato	golgi, plasma membrane	42.47	70.78
Bra002068.1-P	Field mustard	plasma membrane	60.74	62.6
Bra037268.1-P	Field mustard	golgi, plasma membrane	60.49	62.34
CDY24342	Canola	plasma membrane	60.49	62.34
CDY26812	Canola	plasma membrane	60.49	62.34
CDY30361	Canola	golgi, plasma membrane	60.49	62.34
CDY18579	Canola	plasma membrane	60.49	62.18
AT2G17500.2	Thale cress	plasma membrane	60.74	62.12
CDY57767	Canola	plasma membrane	60.49	62.03
CDY55102	Canola	plasma membrane	60.49	62.03
CDX81425	Canola	plasma membrane	60.0	61.83
AT5G65980.1	Thale cress	plasma membrane	60.25	61.77
Bra031803.1-P	Field mustard	plasma membrane	58.27	61.46
CDY57768	Canola	extracellular, plasma membrane, vacuole	20.25	61.19
VIT_07s0031g02200.t01	Wine grape	plasma membrane	62.96	60.57
CDY20805	Canola	extracellular, plasma membrane	45.68	60.26
KRH76521	Soybean	plasma membrane	58.52	56.56
GSMUA_Achr2P03670_001	Banana	golgi, plasma membrane, vacuole	56.3	56.44
KRH28941	Soybean	plasma membrane	58.02	56.09
GSMUA_Achr10P...	Banana	golgi, plasma membrane	57.04	56.07
GSMUA_Achr9P21210_001	Banana	plasma membrane	58.02	55.82
KXG36159	Sorghum	plasma membrane	55.31	53.98
TraesCS5B01G356700.1	Wheat	plasma membrane	55.56	53.96
TraesCS5A01G354300.1	Wheat	plasma membrane	55.31	53.85
TraesCS5D01G361500.1	Wheat	plasma membrane	53.83	53.83
Os09t0555100-00	Rice	plasma membrane	55.8	53.43
HORVU5Hr1G087880.13	Barley	plasma membrane	55.31	52.46
Os09t0554300-01	Rice	plasma membrane	55.31	52.34
KRH39407	Soybean	endoplasmic reticulum, plasma membrane, vacuole	52.84	52.32
TraesCS6A01G421200.1	Wheat	plasma membrane	52.84	51.82
GSMUA_Achr4P25890_001	Banana	plasma membrane	54.32	51.76
GSMUA_Achr10P...	Banana	golgi, plasma membrane	52.84	51.69
GSMUA_Achr5P15890_001	Banana	golgi, plasma membrane	53.58	51.18
TraesCS6D01G404400.1	Wheat	plasma membrane	53.33	50.35
TraesCS6B01G466900.1	Wheat	plasma membrane	53.09	48.86
KXG34923	Sorghum	plasma membrane	50.86	47.58
HORVU6Hr1G094970.4	Barley	golgi	50.86	47.58
TraesCS4D01G319200.1	Wheat	plasma membrane	47.16	46.25
TraesCS4B01G322800.1	Wheat	plasma membrane	46.42	45.63
OQU93318	Sorghum	plasma membrane	46.91	45.35
Zm00001d007499_P001	Maize	plasma membrane	18.02	45.34
KRH56032	Soybean	extracellular, golgi, plasma membrane	13.58	45.08
Solyc02g037550.2.1	Tomato	plasma membrane	43.95	44.95
Zm00001d040149_P001	Maize	plasma membrane	27.65	43.92
Solyc04g082830.2.1	Tomato	plasma membrane	42.22	43.18
TraesCS5D01G361600.2	Wheat	mitochondrion, plasma membrane	54.81	42.77
Zm00001d021413_P002	Maize	plasma membrane	46.17	41.56
Solyc12g095750.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	41.98	40.57
Bra037193.1-P	Field mustard	plasma membrane	59.26	39.34
Solyc03g031990.2.1	Tomato	golgi, plasma membrane, vacuole	39.01	38.07
Zm00001d025364_P002	Maize	plasma membrane	30.37	36.94
HORVU4Hr1G082680.2	Barley	cytosol, endoplasmic reticulum, plasma membrane	20.74	36.05
TraesCS5A01G494900.1	Wheat	golgi, peroxisome, plasma membrane, plastid	44.69	35.15
Zm00001d007109_P001	Maize	cytosol, golgi, plastid	26.42	34.63
Solyc10g074790.1.1	Tomato	plasma membrane	29.88	28.54
Solyc02g091240.1.1	Tomato	golgi, plasma membrane	27.65	24.78

Protein Annotations

EnsemblPlants:Solyc02g082450.2.1	EnsemblPlantsGene:Solyc02g082450.2	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	InterPro:Mem_trans	PANTHER:PTHR31651	PANTHER:PTHR31651:SF3	PFAM:PF03547
TMHMM:TMhelix	UniParc:UPI0002767F20	UniProt:K4BAB5	MapMan:11.2.4.2	MapMan:24.2.5.2.2	:

Description

No Description!

Coordinates

chr2:+:46148304..46150886

Molecular Weight (calculated)

44188.8 Da

IEP (calculated)

6.129

GRAVY (calculated)

0.598

Length

405 amino acids

Sequence
(BLAST)

001: MGFMTLLEVA SMPILQVLIV SGLGAVMATD YLKLLPADAR KYLNRIVFVI FTPALMFASL AESVTFQDII TWWFMPVNVG LTFLFGGILG WIAMKILKPK
101: PHLEGLIIAT CSSGNLGNLL LIVIPAICKE DGSPFGDHKT CASVGLSYAS FSMALGGFYI WTFTYQLIRN SSLKFKSLKT AEENEAFKGP NVDSETNEKS
201: CLLDNNSQDQ LPISTTKTTE NQTVEVSSWR KIVGVVHTFL EEITAPPTLG AIVGFLFGSV TWLKNLVIGD AAPLRVIQDS VKLLGDGTIP CITLILGGNL
301: TQGLRKAEVK PSTIIAVVCV RFIFSPLIGI VIVKTAANLG FLPADPLYHF VLMLQYTVPP AMNISTMTQL VDVAQEECSV LIMWTYLVAA SALTIWSTIF
401: MWILS

Best Arabidopsis Sequence Match ( AT2G17500.2 )
(BLAST)

001: MGFWSLLEVA SMPVIQVLFM SLVGAFMASD RCKLFPVEAR NSMNKVVFVL FAPALMFANL AQTVTLEDII SWWFMPVNMG LTFLIGGLLG WLVVKILKPP
101: PYLEGLIVAT CSAGNMGNLP IILVPAICDE DKSPFGNRSV CRTVGLSYAS FSMALGGFYI WTYTFRLIKG SAMKVQAIEE SEKIAIKSSN SDLEADHKTH
201: LLGAPEDKEN KVVKEKTGFW RKGVDFLHEI LEELLAPPTL GAIIGFIFGA VRWLRNLIIG DDAPLRIVQS TAKLLGDGTI PCMTIILGGN LIQGLRSSAV
301: KPMVVLGIVC VRYIAMPIIG IGIVLTAANL GFLPADPLFQ YVLMLQFTLP PAMNIGTMTQ LYNVAQDECS VLMLWTYLVA ILALTVWSTI FLHLLV

Arabidopsis Description

PILS5Protein PIN-LIKES 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHL8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.