Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G322800.1 | Wheat | plasma membrane | 95.88 | 96.12 |
| HORVU4Hr1G082680.2 | Barley | cytosol, endoplasmic reticulum, plasma membrane | 46.49 | 82.4 |
| OQU93318 | Sorghum | plasma membrane | 75.3 | 74.22 |
| TraesCS5A01G494900.1 | Wheat | golgi, peroxisome, plasma membrane, plastid | 91.53 | 73.4 |
| GSMUA_Achr4P25890_001 | Banana | plasma membrane | 51.82 | 50.35 |
| GSMUA_Achr5P15890_001 | Banana | golgi, plasma membrane | 51.33 | 50.0 |
| CDY18579 | Canola | plasma membrane | 47.46 | 49.75 |
| Bra002068.1-P | Field mustard | plasma membrane | 47.22 | 49.62 |
| CDX81425 | Canola | plasma membrane | 47.22 | 49.62 |
| CDY24342 | Canola | plasma membrane | 47.22 | 49.62 |
| TraesCS5D01G361500.1 | Wheat | plasma membrane | 48.43 | 49.38 |
| CDY55102 | Canola | plasma membrane | 47.22 | 49.37 |
| CDY57767 | Canola | plasma membrane | 47.22 | 49.37 |
| CDY26812 | Canola | plasma membrane | 46.97 | 49.36 |
| CDY30361 | Canola | golgi, plasma membrane | 46.97 | 49.36 |
| Bra037268.1-P | Field mustard | golgi, plasma membrane | 46.97 | 49.36 |
| Bra031803.1-P | Field mustard | plasma membrane | 45.76 | 49.22 |
| AT2G17500.2 | Thale cress | plasma membrane | 46.73 | 48.74 |
| PGSC0003DMT400035511 | Potato | plasma membrane | 47.7 | 48.64 |
| PGSC0003DMT400048041 | Potato | plasma membrane | 46.49 | 48.61 |
| AT5G65980.1 | Thale cress | plasma membrane | 46.49 | 48.61 |
| CDY57768 | Canola | extracellular, plasma membrane, vacuole | 15.74 | 48.51 |
| TraesCS6D01G404400.1 | Wheat | plasma membrane | 50.36 | 48.48 |
| Solyc02g082450.2.1 | Tomato | nucleus | 46.25 | 47.16 |
| VIT_07s0031g02200.t01 | Wine grape | plasma membrane | 47.22 | 46.32 |
| CDY20805 | Canola | extracellular, plasma membrane | 34.14 | 45.93 |
| TraesCS5D01G275200.1 | Wheat | plasma membrane | 33.66 | 44.98 |
| KRH76521 | Soybean | plasma membrane | 44.79 | 44.15 |
| KRH39407 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 43.34 | 43.77 |
| KRH28941 | Soybean | plasma membrane | 44.07 | 43.44 |
| Solyc03g032080.2.1 | Tomato | golgi, plasma membrane | 24.46 | 41.56 |
| TraesCS5D01G361600.2 | Wheat | mitochondrion, plasma membrane | 51.57 | 41.04 |
| KRH56032 | Soybean | extracellular, golgi, plasma membrane | 12.11 | 40.98 |
| Bra037193.1-P | Field mustard | plasma membrane | 46.73 | 31.64 |
| TraesCS3D01G530400.1 | Wheat | plasma membrane | 27.6 | 25.45 |
| TraesCS4D01G174100.2 | Wheat | golgi, plasma membrane, vacuole | 23.97 | 23.46 |
| TraesCS3D01G335100.1 | Wheat | plasma membrane | 23.49 | 22.45 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G319200.1 | EnsemblPlantsGene:TraesCS4D01G319200 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0055085 | InterPro:Mem_trans | PANTHER:PTHR31651 | PANTHER:PTHR31651:SF7 | PFAM:PF03547 |
| PFscan:PS51257 | SEG:seg | SignalP:SignalP-TM | TMHMM:TMhelix | MapMan:11.2.4.2 | MapMan:24.2.5.2.2 |
Description
No Description!
Coordinates
chr4D:+:483105544..483107599
Molecular Weight (calculated)
44461.6 Da
IEP (calculated)
6.853
GRAVY (calculated)
0.532
Length
413 amino acids
Sequence
(BLAST)
(BLAST)
001: MRFWSLLAVA WLPVLQVLLA GGLGACLASS RFDVLTSDAR RHINKVVYIV FVPSLVFSSL AGTVTLKDII SWWFMPVNMG IIFLIGAALG WLAVKALKPG
101: AHLQGLIIAC SSAGNWGTIP LMIVPAICNE EDSPFGDADT CKSLGLSYVS LSMALGNFFI WTHSYSVMKR SAQLYKKCGD PSTNLTKEEN SGEAENGNHA
201: AFLPLSSGEF LHEDVESDPV SSSIPSNGVA GSFLHYLRRA KELLVEILNE LWSPPSVAAL VGFTVGAIDK LRPLVTEEDG PLRVVQDTAK LLADAAIPCT
301: VLILGGNLTK GRGRTTMKPL VVISITVIRF VILPSCGIGV VKAARELGFL PRSPLYRYVL LLQSTVPPAM SIGTIAQLFD VGEEECSIVF LWTHLVAALA
401: LTLWSTVFMS LVS
101: AHLQGLIIAC SSAGNWGTIP LMIVPAICNE EDSPFGDADT CKSLGLSYVS LSMALGNFFI WTHSYSVMKR SAQLYKKCGD PSTNLTKEEN SGEAENGNHA
201: AFLPLSSGEF LHEDVESDPV SSSIPSNGVA GSFLHYLRRA KELLVEILNE LWSPPSVAAL VGFTVGAIDK LRPLVTEEDG PLRVVQDTAK LLADAAIPCT
301: VLILGGNLTK GRGRTTMKPL VVISITVIRF VILPSCGIGV VKAARELGFL PRSPLYRYVL LLQSTVPPAM SIGTIAQLFD VGEEECSIVF LWTHLVAALA
401: LTLWSTVFMS LVS
001: MGFWSLLEVA SMPVIQVLFM SLVGAFMASD RCKLFPVEAR NSMNKVVFVL FAPALMFANL AQTVTLEDII SWWFMPVNMG LTFLIGGLLG WLVVKILKPP
101: PYLEGLIVAT CSAGNMGNLP IILVPAICDE DKSPFGNRSV CRTVGLSYAS FSMALGGFYI WTYTFRLIKG SAMKVQAIEE SEKIAIKSSN SDLEADHKTH
201: LLGAPEDKEN KVVKEKTGFW RKGVDFLHEI LEELLAPPTL GAIIGFIFGA VRWLRNLIIG DDAPLRIVQS TAKLLGDGTI PCMTIILGGN LIQGLRSSAV
301: KPMVVLGIVC VRYIAMPIIG IGIVLTAANL GFLPADPLFQ YVLMLQFTLP PAMNIGTMTQ LYNVAQDECS VLMLWTYLVA ILALTVWSTI FLHLLV
101: PYLEGLIVAT CSAGNMGNLP IILVPAICDE DKSPFGNRSV CRTVGLSYAS FSMALGGFYI WTYTFRLIKG SAMKVQAIEE SEKIAIKSSN SDLEADHKTH
201: LLGAPEDKEN KVVKEKTGFW RKGVDFLHEI LEELLAPPTL GAIIGFIFGA VRWLRNLIIG DDAPLRIVQS TAKLLGDGTI PCMTIILGGN LIQGLRSSAV
301: KPMVVLGIVC VRYIAMPIIG IGIVLTAANL GFLPADPLFQ YVLMLQFTLP PAMNIGTMTQ LYNVAQDECS VLMLWTYLVA ILALTVWSTI FLHLLV
Arabidopsis Description
PILS5Protein PIN-LIKES 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHL8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.