Factsheet for TraesCS6D01G404400.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G421200.1	Wheat	plasma membrane	88.81	92.25
HORVU6Hr1G094970.4	Barley	golgi	89.74	88.91
TraesCS6B01G466900.1	Wheat	plasma membrane	89.04	86.82
KXG34923	Sorghum	plasma membrane	64.8	64.2
GSMUA_Achr10P...	Banana	golgi, plasma membrane	57.11	59.47
GSMUA_Achr2P03670_001	Banana	golgi, plasma membrane, vacuole	54.31	57.67
TraesCS5D01G361500.1	Wheat	plasma membrane	54.08	57.28
GSMUA_Achr10P...	Banana	golgi, plasma membrane	54.08	56.04
Bra037268.1-P	Field mustard	golgi, plasma membrane	49.88	54.45
CDY30361	Canola	golgi, plasma membrane	49.88	54.45
GSMUA_Achr9P21210_001	Banana	plasma membrane	53.38	54.39
CDX81425	Canola	plasma membrane	49.65	54.2
CDY26812	Canola	plasma membrane	49.65	54.2
CDY55102	Canola	plasma membrane	49.88	54.18
CDY57767	Canola	plasma membrane	49.65	53.92
PGSC0003DMT400035511	Potato	plasma membrane	50.82	53.83
AT5G65980.1	Thale cress	plasma membrane	49.42	53.67
Bra031803.1-P	Field mustard	plasma membrane	48.02	53.65
CDY18579	Canola	plasma membrane	49.18	53.55
Solyc02g082450.2.1	Tomato	nucleus	50.35	53.33
AT2G17500.2	Thale cress	plasma membrane	49.18	53.28
CDY24342	Canola	plasma membrane	48.48	52.93
Bra002068.1-P	Field mustard	plasma membrane	48.48	52.93
CDY20805	Canola	extracellular, plasma membrane	36.83	51.47
PGSC0003DMT400048041	Potato	plasma membrane	46.62	50.63
TraesCS4D01G319200.1	Wheat	plasma membrane	48.48	50.36
VIT_07s0031g02200.t01	Wine grape	plasma membrane	49.42	50.36
Solyc03g032080.2.1	Tomato	golgi, plasma membrane	27.27	48.15
CDY57768	Canola	extracellular, plasma membrane, vacuole	14.69	47.01
TraesCS5D01G361600.2	Wheat	mitochondrion, plasma membrane	56.64	46.82
TraesCS5D01G275200.1	Wheat	plasma membrane	32.87	45.63
KRH76521	Soybean	plasma membrane	43.59	44.63
KRH39407	Soybean	endoplasmic reticulum, plasma membrane, vacuole	41.96	44.01
KRH28941	Soybean	plasma membrane	42.66	43.68
KRH56032	Soybean	extracellular, golgi, plasma membrane	11.89	41.8
Bra037193.1-P	Field mustard	plasma membrane	48.48	34.1
TraesCS3D01G530400.1	Wheat	plasma membrane	26.34	25.22
TraesCS4D01G174100.2	Wheat	golgi, plasma membrane, vacuole	24.71	25.12
TraesCS3D01G335100.1	Wheat	plasma membrane	24.71	24.54

Protein Annotations

EnsemblPlants:TraesCS6D01G404400.1	EnsemblPlantsGene:TraesCS6D01G404400	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	InterPro:Mem_trans	PANTHER:PTHR31651	PANTHER:PTHR31651:SF3	PFAM:PF03547
SEG:seg	TMHMM:TMhelix	MapMan:11.2.4.2	MapMan:24.2.5.2.2	:	:

Description

No Description!

Coordinates

chr6D:+:472301377..472303076

Molecular Weight (calculated)

45722.3 Da

IEP (calculated)

7.416

GRAVY (calculated)

0.551

Length

429 amino acids

Sequence
(BLAST)

001: MGFVSLLAVA STPVVEVLLL ALLGAYLASP RCGLLAPSAR ADINRVVYAV FTPALLLASL ASTVTLQDAL SWWFMPVNIG IVFFAGGVLG WLAVLILRPP
101: PHLRGLVVAS CSAANFGNLL LIVIPAVCRE DGNPFGGDCT GRGLSYASFS MALGGLYIWT HTNSVMKRSS EVCRRMVADQ EAEAAEAHDH SKDSVSVTVT
201: VSVRPEEKGK QEEDEPSCLS PLPSSSSNQH HTAALAPLLS SGKMTSSDSL WAKLKQGAHQ IAKELMAPPT VGAVLGFTVG TVPWLRSAFI GDSAPLRVVQ
301: DSLKLLGDGT IPCVILILGG NLTKGLRKTT MSRWVIAAIV CVRYMILPVV GIVVVRTARE LGFLPPDPLY QYVLMLQFAL PPAMSISTMA QLYDVAQEEC
401: SVVFLWTYLV AALALTAWST VFMSILAPA

Best Arabidopsis Sequence Match ( AT2G17500.1 )
(BLAST)

001: MGFWSLLEVA SMPVIQVLFM SLVGAFMASD RCKLFPVEAR NSMNKVVFVL FAPALMFANL AQTVTLEDII SWWFMPVNMG LTFLIGGLLG WLVVKILKPP
101: PYLEGLIVAT CSAGNMGNLP IILVPAICDE DKSPFGNRSV CRTVGLSYAS FSMALGGFYI WTYTFRLIKG SAMKVQAIEE SEKIAIKSSN SDLEADHKTH
201: LLGAPEDKEN KVVKEKTGFW RKGVDFLHEI LEELLAPPTL GAIIGFIFGA VRWLRNLIIG DDAPLRIVQS TAKLLGDGTI PCMTIILGGN LIQGLRSSAV
301: KPMVVLGIVC VRYIAMPIIG IGIVLTAANL GFLPADPLFQ YVLMLQFTLP PAMNIGTMTQ LYNVAQDECS VLMLWTYLVA ILALTVWSTI FLHLLV

Arabidopsis Description

PILS5Protein PIN-LIKES 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHL8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.