Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G421200.1 | Wheat | plasma membrane | 85.45 | 91.04 |
| TraesCS6D01G404400.1 | Wheat | plasma membrane | 86.82 | 89.04 |
| HORVU6Hr1G094970.4 | Barley | golgi | 84.55 | 85.91 |
| KXG34923 | Sorghum | plasma membrane | 64.32 | 65.36 |
| GSMUA_Achr10P... | Banana | golgi, plasma membrane | 56.36 | 60.19 |
| TraesCS5B01G356700.1 | Wheat | plasma membrane | 56.82 | 59.95 |
| GSMUA_Achr2P03670_001 | Banana | golgi, plasma membrane, vacuole | 53.41 | 58.17 |
| GSMUA_Achr10P... | Banana | golgi, plasma membrane | 53.18 | 56.52 |
| GSMUA_Achr9P21210_001 | Banana | plasma membrane | 52.95 | 55.34 |
| Bra037268.1-P | Field mustard | golgi, plasma membrane | 49.32 | 55.22 |
| CDX81425 | Canola | plasma membrane | 49.32 | 55.22 |
| CDY30361 | Canola | golgi, plasma membrane | 49.32 | 55.22 |
| CDY26812 | Canola | plasma membrane | 49.09 | 54.96 |
| CDY55102 | Canola | plasma membrane | 49.32 | 54.94 |
| CDY57767 | Canola | plasma membrane | 49.09 | 54.68 |
| CDY18579 | Canola | plasma membrane | 48.86 | 54.57 |
| Bra031803.1-P | Field mustard | plasma membrane | 47.5 | 54.43 |
| AT5G65980.1 | Thale cress | plasma membrane | 48.64 | 54.18 |
| AT2G17500.2 | Thale cress | plasma membrane | 48.64 | 54.04 |
| PGSC0003DMT400035511 | Potato | plasma membrane | 49.55 | 53.83 |
| CDY24342 | Canola | plasma membrane | 47.73 | 53.44 |
| Bra002068.1-P | Field mustard | plasma membrane | 47.73 | 53.44 |
| Solyc02g082450.2.1 | Tomato | nucleus | 48.86 | 53.09 |
| PGSC0003DMT400048041 | Potato | plasma membrane | 47.27 | 52.66 |
| TraesCS4B01G322800.1 | Wheat | plasma membrane | 48.64 | 51.94 |
| CDY20805 | Canola | extracellular, plasma membrane | 36.14 | 51.79 |
| VIT_07s0031g02200.t01 | Wine grape | plasma membrane | 49.09 | 51.31 |
| Solyc03g032080.2.1 | Tomato | golgi, plasma membrane | 28.18 | 51.03 |
| CDY57768 | Canola | extracellular, plasma membrane, vacuole | 14.55 | 47.76 |
| KRH76521 | Soybean | plasma membrane | 43.64 | 45.82 |
| KRH28941 | Soybean | plasma membrane | 42.73 | 44.87 |
| KRH39407 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 41.14 | 44.25 |
| KRH56032 | Soybean | extracellular, golgi, plasma membrane | 11.59 | 41.8 |
| Bra037193.1-P | Field mustard | plasma membrane | 48.18 | 34.75 |
| TraesCS5B01G267800.2 | Wheat | golgi, plasma membrane, vacuole | 27.95 | 32.63 |
| TraesCS3B01G592500.1 | Wheat | plasma membrane | 26.82 | 26.34 |
| TraesCS4B01G172100.1 | Wheat | golgi, plasma membrane, vacuole | 23.64 | 25.43 |
| TraesCS3B01G373500.1 | Wheat | plasma membrane | 24.55 | 25.0 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G466900.1 | EnsemblPlantsGene:TraesCS6B01G466900 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0055085 | InterPro:Mem_trans | PANTHER:PTHR31651 | PANTHER:PTHR31651:SF3 | PFAM:PF03547 |
| SEG:seg | TMHMM:TMhelix | MapMan:11.2.4.2 | MapMan:24.2.5.2.2 | : | : |
Description
No Description!
Coordinates
chr6B:+:716971464..716973332
Molecular Weight (calculated)
46749.1 Da
IEP (calculated)
6.278
GRAVY (calculated)
0.484
Length
440 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFVSLLAVA STPVVEVLLV ALLGAYLASP RCGLLAPSAR ADINRVVYAV FTPALLLASL ASTVTLHDAL SWWFMPVNIG IIFLAGGVLG WLAVLILRPP
101: PHLRGLVVAS CSAANFGNLL LIVIPAVCRE DGNPFGGDCT GRGLSYASFS MALGGLYIWT HTYSVMKRSS EVCRRMAAAA EAHDHAKKDP VDVTVAVEEE
201: EEGDEEQPSW NDGDGGEDGL VLAPSSSSSS SHQHQTSLMG PLLSSHHHRH SSGKMTSSGS LWAKLTQGTQ QIVEELMAPP TVGAVLGFTV GTVPWLRSAF
301: IGDGAPLRVV QDSLKLLGDG TIPCVTLILG GNLTKGLRKT TMSRWVIAAI VCVRYVILPV VGVAVVRTAR ELGFLPPDPL YQYVLMLQFA LPPAMSIGTM
401: AQLYDVAQEE CSVVFLWTYL VAALALTAWS TVFMSILAPA
101: PHLRGLVVAS CSAANFGNLL LIVIPAVCRE DGNPFGGDCT GRGLSYASFS MALGGLYIWT HTYSVMKRSS EVCRRMAAAA EAHDHAKKDP VDVTVAVEEE
201: EEGDEEQPSW NDGDGGEDGL VLAPSSSSSS SHQHQTSLMG PLLSSHHHRH SSGKMTSSGS LWAKLTQGTQ QIVEELMAPP TVGAVLGFTV GTVPWLRSAF
301: IGDGAPLRVV QDSLKLLGDG TIPCVTLILG GNLTKGLRKT TMSRWVIAAI VCVRYVILPV VGVAVVRTAR ELGFLPPDPL YQYVLMLQFA LPPAMSIGTM
401: AQLYDVAQEE CSVVFLWTYL VAALALTAWS TVFMSILAPA
001: MGFWSLLEVA SMPVIQVLFM SLVGAFMASD RCKLFPVEAR NSMNKVVFVL FAPALMFANL AQTVTLEDII SWWFMPVNMG LTFLIGGLLG WLVVKILKPP
101: PYLEGLIVAT CSAGNMGNLP IILVPAICDE DKSPFGNRSV CRTVGLSYAS FSMALGGFYI WTYTFRLIKG SAMKVQAIEE SEKIAIKSSN SDLEADHKTH
201: LLGAPEDKEN KVVKEKTGFW RKGVDFLHEI LEELLAPPTL GAIIGFIFGA VRWLRNLIIG DDAPLRIVQS TAKLLGDGTI PCMTIILGGN LIQGLRSSAV
301: KPMVVLGIVC VRYIAMPIIG IGIVLTAANL GFLPADPLFQ YVLMLQFTLP PAMNIGTMTQ LYNVAQDECS VLMLWTYLVA ILALTVWSTI FLHLLV
101: PYLEGLIVAT CSAGNMGNLP IILVPAICDE DKSPFGNRSV CRTVGLSYAS FSMALGGFYI WTYTFRLIKG SAMKVQAIEE SEKIAIKSSN SDLEADHKTH
201: LLGAPEDKEN KVVKEKTGFW RKGVDFLHEI LEELLAPPTL GAIIGFIFGA VRWLRNLIIG DDAPLRIVQS TAKLLGDGTI PCMTIILGGN LIQGLRSSAV
301: KPMVVLGIVC VRYIAMPIIG IGIVLTAANL GFLPADPLFQ YVLMLQFTLP PAMNIGTMTQ LYNVAQDECS VLMLWTYLVA ILALTVWSTI FLHLLV
Arabidopsis Description
PILS5Protein PIN-LIKES 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHL8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.