Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, vacuole
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G132600.1 | Wheat | golgi, plasma membrane, vacuole | 95.35 | 96.77 |
| TraesCS4D01G174100.2 | Wheat | golgi, plasma membrane, vacuole | 97.07 | 94.08 |
| HORVU4Hr1G050910.5 | Barley | golgi, plasma membrane, plastid | 94.62 | 81.3 |
| GSMUA_Achr3P09660_001 | Banana | golgi, plasma membrane | 66.26 | 71.32 |
| GSMUA_Achr9P16830_001 | Banana | plasma membrane | 69.68 | 68.51 |
| TraesCS3B01G373500.1 | Wheat | plasma membrane | 68.7 | 65.05 |
| VIT_08s0056g00310.t01 | Wine grape | cytosol, golgi, plasma membrane | 64.06 | 64.69 |
| Bra030441.1-P | Field mustard | golgi, plasma membrane, plastid | 64.55 | 62.41 |
| CDY03621 | Canola | cytosol, golgi, plasma membrane | 65.53 | 62.18 |
| CDY01222 | Canola | golgi, plasma membrane, plastid | 63.81 | 62.0 |
| Bra014265.1-P | Field mustard | plasma membrane | 65.28 | 61.95 |
| CDY58937 | Canola | cytosol, golgi, plasma membrane | 65.28 | 61.95 |
| CDY70057 | Canola | golgi, plasma membrane, plastid | 63.81 | 61.7 |
| KRH40632 | Soybean | plasma membrane | 61.61 | 60.87 |
| AT5G01990.1 | Thale cress | golgi, plasma membrane, vacuole | 63.57 | 60.32 |
| KRH00524 | Soybean | plasma membrane | 60.88 | 60.14 |
| Solyc10g074790.1.1 | Tomato | plasma membrane | 62.1 | 59.91 |
| PGSC0003DMT400071229 | Potato | cytosol, golgi, plasma membrane | 61.61 | 59.43 |
| TraesCS3B01G592500.1 | Wheat | plasma membrane | 36.67 | 33.48 |
| TraesCS5B01G356700.1 | Wheat | plasma membrane | 28.36 | 27.82 |
| TraesCS5B01G267800.2 | Wheat | golgi, plasma membrane, vacuole | 22.49 | 24.4 |
| TraesCS4B01G322800.1 | Wheat | plasma membrane | 23.96 | 23.79 |
| TraesCS6B01G466900.1 | Wheat | plasma membrane | 25.43 | 23.64 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G172100.1 | EnsemblPlantsGene:TraesCS4B01G172100 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0055085 | InterPro:Mem_trans | PANTHER:PTHR31419 | PANTHER:PTHR31419:SF1 | PFAM:PF03547 |
| SEG:seg | TMHMM:TMhelix | MapMan:11.2.4.2 | MapMan:24.2.5.2.2 | : | : |
Description
No Description!
Coordinates
chr4B:-:376252551..376257770
Molecular Weight (calculated)
44067.5 Da
IEP (calculated)
9.292
GRAVY (calculated)
0.675
Length
409 amino acids
Sequence
(BLAST)
(BLAST)
001: MMEMSLMEAM VSGGTGESIL TSMKFAVLPI AKVFTLCFMG FLMATRYIGI LDANGRKLLN GLVFSLLLPC LIFTQLGRAI TVQKLLDWWY IPLNIVLGTV
101: SGSLVGLLVA FIVQPPRPYF KFTVVHIAIG NNGNMPLVLI AALCRDPSNP FGDPEKCRQD GNAYVSFGQW VGAIILYSYV FQMLAPPPGE TFDGSRVEKP
201: PPPALAAAPE QVPLLTSRAS EQAPKCSKAL QILHIFVQKF KLKRVFQPPV IASALGISIG ATPSLKHLVL TNHAPLFFFT DACIILGGAM IPCILLALGG
301: NLVDGPSAGS KKLGLRTTAA IIIGRLVLVP PAGMCMVALA DRLGFIPRGD TMFKFVLLLQ HSMPTSVLSG AVANLRGCGE ESAAVLFWMY VCAVFSVAGW
401: MVLYIRMLF
101: SGSLVGLLVA FIVQPPRPYF KFTVVHIAIG NNGNMPLVLI AALCRDPSNP FGDPEKCRQD GNAYVSFGQW VGAIILYSYV FQMLAPPPGE TFDGSRVEKP
201: PPPALAAAPE QVPLLTSRAS EQAPKCSKAL QILHIFVQKF KLKRVFQPPV IASALGISIG ATPSLKHLVL TNHAPLFFFT DACIILGGAM IPCILLALGG
301: NLVDGPSAGS KKLGLRTTAA IIIGRLVLVP PAGMCMVALA DRLGFIPRGD TMFKFVLLLQ HSMPTSVLSG AVANLRGCGE ESAAVLFWMY VCAVFSVAGW
401: MVLYIRMLF
001: MIARILAALA DSMEMPVAAG GGSVLGTIKI AVMPIAKVFT MCFLGLLMAS KYVNILPPSG RKLLNGLVFS LLLPCLIFSQ LGQAVTLQKM LQWWFIPVNV
101: VLGTISGSII GFIVASIVRP PYPYFKFTII QIGVGNIGNV PLVLLAALCR DTSNPFGDSE KCSIDGTAYI SFGQWVGAII LYTYVYQMFA PPPEGFDAEE
201: ENLALKTLPV DAAPEQVPLL TQNFPKDFSP TQDLLPVQST EPRGRGVSRK GKIAQIFVFL YEKLKLKQIV QPAIVASILA MILGAIPFTK KLIFTNGAPL
301: FFFTDSCMIL GDAMIPCILL ALGGNLINGP GSSKLGFKTT AAIIIGRLVL VPPVGLGIVT VADKLGFLPA DDKMFRFVLL LQHTMPTSVL SGAVANLRGC
401: GRESAAVLFW VHIFAIFSMA GWMVLYINIL F
101: VLGTISGSII GFIVASIVRP PYPYFKFTII QIGVGNIGNV PLVLLAALCR DTSNPFGDSE KCSIDGTAYI SFGQWVGAII LYTYVYQMFA PPPEGFDAEE
201: ENLALKTLPV DAAPEQVPLL TQNFPKDFSP TQDLLPVQST EPRGRGVSRK GKIAQIFVFL YEKLKLKQIV QPAIVASILA MILGAIPFTK KLIFTNGAPL
301: FFFTDSCMIL GDAMIPCILL ALGGNLINGP GSSKLGFKTT AAIIIGRLVL VPPVGLGIVT VADKLGFLPA DDKMFRFVLL LQHTMPTSVL SGAVANLRGC
401: GRESAAVLFW VHIFAIFSMA GWMVLYINIL F
Arabidopsis Description
PILS6Protein PIN-LIKES 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN2]
SUBAcon: [plasma membrane,golgi,vacuole]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.