Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- golgi 2
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400071229 | Potato | cytosol, golgi, plasma membrane | 96.23 | 96.23 |
| KRH00524 | Soybean | plasma membrane | 70.75 | 72.46 |
| GSMUA_Achr3P09660_001 | Banana | golgi, plasma membrane | 64.86 | 72.37 |
| KRH40632 | Soybean | plasma membrane | 70.05 | 71.74 |
| VIT_08s0056g00310.t01 | Wine grape | cytosol, golgi, plasma membrane | 67.69 | 70.86 |
| CDY01222 | Canola | golgi, plasma membrane, plastid | 69.1 | 69.6 |
| GSMUA_Achr9P16830_001 | Banana | plasma membrane | 68.16 | 69.47 |
| Bra030441.1-P | Field mustard | golgi, plasma membrane, plastid | 69.1 | 69.27 |
| AT5G01990.1 | Thale cress | golgi, plasma membrane, vacuole | 70.28 | 69.14 |
| CDY70057 | Canola | golgi, plasma membrane, plastid | 68.87 | 69.03 |
| Bra014265.1-P | Field mustard | plasma membrane | 70.05 | 68.91 |
| CDY03621 | Canola | cytosol, golgi, plasma membrane | 70.05 | 68.91 |
| CDY58937 | Canola | cytosol, golgi, plasma membrane | 70.05 | 68.91 |
| HORVU3Hr1G080640.5 | Barley | plasma membrane | 67.45 | 66.2 |
| TraesCS3B01G373500.1 | Wheat | plasma membrane | 67.22 | 65.97 |
| TraesCS3A01G341400.1 | Wheat | plasma membrane | 67.22 | 65.97 |
| Os01t0818000-01 | Rice | plasma membrane | 66.98 | 65.74 |
| TraesCS3D01G335100.1 | Wheat | plasma membrane | 66.98 | 65.74 |
| EES01656 | Sorghum | plasma membrane | 66.27 | 64.9 |
| Zm00001d043083_P003 | Maize | plasma membrane | 65.57 | 64.2 |
| TraesCS4B01G172100.1 | Wheat | golgi, plasma membrane, vacuole | 59.91 | 62.1 |
| Os05t0481900-01 | Rice | golgi, plasma membrane, plastid | 62.26 | 60.41 |
| TraesCS4A01G132600.1 | Wheat | golgi, plasma membrane, vacuole | 56.84 | 59.8 |
| TraesCS4D01G174100.2 | Wheat | golgi, plasma membrane, vacuole | 59.43 | 59.72 |
| HORVU4Hr1G050910.5 | Barley | golgi, plasma membrane, plastid | 60.61 | 53.99 |
| Solyc02g091240.1.1 | Tomato | golgi, plasma membrane | 39.39 | 36.95 |
| Solyc02g037550.2.1 | Tomato | plasma membrane | 28.77 | 30.81 |
| Solyc04g082830.2.1 | Tomato | plasma membrane | 28.07 | 30.05 |
| Solyc02g082450.2.1 | Tomato | nucleus | 28.54 | 29.88 |
| Solyc03g031990.2.1 | Tomato | golgi, plasma membrane, vacuole | 27.36 | 27.95 |
| Solyc12g095750.1.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 27.12 | 27.45 |
| Solyc03g032080.2.1 | Tomato | golgi, plasma membrane | 14.39 | 25.1 |
Protein Annotations
| MapMan:11.2.4.2 | MapMan:24.2.5.2.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009733 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | UniProt:K4D1S1 | InterPro:Mem_trans | PFAM:PF03547 |
| PANTHER:PTHR31419 | PANTHER:PTHR31419:SF1 | EnsemblPlantsGene:Solyc10g074790.1 | EnsemblPlants:Solyc10g074790.1.1 | TMHMM:TMhelix | UniParc:UPI0002769A5A |
| SEG:seg | : | : | : | : | : |
Description
Protein PIN-LIKES 6 [Source:Projected from Arabidopsis thaliana (AT5G01990) UniProtKB/Swiss-Prot;Acc:Q9LZN2]
Coordinates
chr10:+:58507231..58511255
Molecular Weight (calculated)
46118.8 Da
IEP (calculated)
8.909
GRAVY (calculated)
0.710
Length
424 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRVSRILFS VLTEPQRGGQ SFITSIKIAV LPIAKVFTLC FLGFLMASKY VNILPANGRK LLNGLVFSLL LPCLIFSQLG QAITYEKLLQ WWFIPVNIVL
101: ATIFGSIIGL IVATIVRPPY PYFKFTIIQI GIGNIGNVPL VLIAALCRDP SNPFGDSEIC ARDGNAYISF GQWVGAIILY TFVFQMLSPP PEGSFDVEDA
201: NLPIKVPNKE RLPSHPSGSS AEQVPLLATN VAPADSSSSN KEKVKQFFKF LYETLKLKQL IQPPIIASII AIIIGCVPVL KRLIFTSDAP LYFFTDSCLI
301: LGDAMIPCIL LALGGNLVDG PGPGSSKIGL KTTVAIVFAR LCLVPPTGLS IVMLADKLGF LPADDKMFRF VLLLQYSMPT SILAGAVANL RGCGKEAASI
401: LFWVHIFAVI SMAGWIILYL NILF
101: ATIFGSIIGL IVATIVRPPY PYFKFTIIQI GIGNIGNVPL VLIAALCRDP SNPFGDSEIC ARDGNAYISF GQWVGAIILY TFVFQMLSPP PEGSFDVEDA
201: NLPIKVPNKE RLPSHPSGSS AEQVPLLATN VAPADSSSSN KEKVKQFFKF LYETLKLKQL IQPPIIASII AIIIGCVPVL KRLIFTSDAP LYFFTDSCLI
301: LGDAMIPCIL LALGGNLVDG PGPGSSKIGL KTTVAIVFAR LCLVPPTGLS IVMLADKLGF LPADDKMFRF VLLLQYSMPT SILAGAVANL RGCGKEAASI
401: LFWVHIFAVI SMAGWIILYL NILF
001: MIARILAALA DSMEMPVAAG GGSVLGTIKI AVMPIAKVFT MCFLGLLMAS KYVNILPPSG RKLLNGLVFS LLLPCLIFSQ LGQAVTLQKM LQWWFIPVNV
101: VLGTISGSII GFIVASIVRP PYPYFKFTII QIGVGNIGNV PLVLLAALCR DTSNPFGDSE KCSIDGTAYI SFGQWVGAII LYTYVYQMFA PPPEGFDAEE
201: ENLALKTLPV DAAPEQVPLL TQNFPKDFSP TQDLLPVQST EPRGRGVSRK GKIAQIFVFL YEKLKLKQIV QPAIVASILA MILGAIPFTK KLIFTNGAPL
301: FFFTDSCMIL GDAMIPCILL ALGGNLINGP GSSKLGFKTT AAIIIGRLVL VPPVGLGIVT VADKLGFLPA DDKMFRFVLL LQHTMPTSVL SGAVANLRGC
401: GRESAAVLFW VHIFAIFSMA GWMVLYINIL F
101: VLGTISGSII GFIVASIVRP PYPYFKFTII QIGVGNIGNV PLVLLAALCR DTSNPFGDSE KCSIDGTAYI SFGQWVGAII LYTYVYQMFA PPPEGFDAEE
201: ENLALKTLPV DAAPEQVPLL TQNFPKDFSP TQDLLPVQST EPRGRGVSRK GKIAQIFVFL YEKLKLKQIV QPAIVASILA MILGAIPFTK KLIFTNGAPL
301: FFFTDSCMIL GDAMIPCILL ALGGNLINGP GSSKLGFKTT AAIIIGRLVL VPPVGLGIVT VADKLGFLPA DDKMFRFVLL LQHTMPTSVL SGAVANLRGC
401: GRESAAVLFW VHIFAIFSMA GWMVLYINIL F
Arabidopsis Description
PILS6Protein PIN-LIKES 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN2]
SUBAcon: [plasma membrane,golgi,vacuole]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.