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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • golgi 2
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
MultiLoc:golgi
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
 plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES01656 Sorghum plasma membrane 90.05 89.84
Zm00001d043083_P003 Maize plasma membrane 89.35 89.15
TraesCS3B01G373500.1 Wheat plasma membrane 87.5 87.5
TraesCS3D01G335100.1 Wheat plasma membrane 87.27 87.27
TraesCS3A01G341400.1 Wheat plasma membrane 87.27 87.27
HORVU3Hr1G080640.5 Barley plasma membrane 87.04 87.04
Os05t0481900-01 Rice golgi, plasma membrane, plastid 76.16 75.29
GSMUA_Achr3P09660_001 Banana golgi, plasma membrane 64.81 73.68
GSMUA_Achr9P16830_001 Banana plasma membrane 68.98 71.63
VIT_08s0056g00310.t01 Wine grape cytosol, golgi, plasma membrane 64.81 69.14
Solyc10g074790.1.1 Tomato plasma membrane 65.74 66.98
PGSC0003DMT400071229 Potato cytosol, golgi, plasma membrane 65.05 66.27
KRH40632 Soybean plasma membrane 62.5 65.22
KRH00524 Soybean plasma membrane 62.27 64.98
CDY01222 Canola golgi, plasma membrane, plastid 62.04 63.66
CDY03621 Canola cytosol, golgi, plasma membrane 63.43 63.57
CDY58937 Canola cytosol, golgi, plasma membrane 63.19 63.34
Bra014265.1-P Field mustard plasma membrane 63.19 63.34
Bra030441.1-P Field mustard golgi, plasma membrane, plastid 61.81 63.12
CDY70057 Canola golgi, plasma membrane, plastid 61.57 62.88
AT5G01990.1 Thale cress golgi, plasma membrane, vacuole 61.81 61.95
Os08t0191000-01 Rice golgi, plasma membrane, plastid 36.34 34.51
Os09t0491740-01 Rice golgi, plasma membrane, vacuole 22.45 25.59
Os09t0554300-01 Rice plasma membrane 24.77 25.0
Os09t0555100-00 Rice plasma membrane 24.07 24.59
Protein Annotations
MapMan:11.2.4.2MapMan:24.2.5.2.2EntrezGene:4327495EMBL:AK069848EMBL:AK070194ProteinID:BAF06541.1
ProteinID:BAS74941.1GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021
GO:GO:0055085InterPro:Mem_transEnsemblPlantsGene:Os01g0818000EnsemblPlants:Os01t0818000-01PFAM:PF03547PANTHER:PTHR31419
PANTHER:PTHR31419:SF1UniProt:Q0JI87TMHMM:TMhelixUniParc:UPI0000DD8DACRefSeq:XP_015621088.1SEG:seg
Description
PIN likes 6aAuxin efflux carrier domain containing protein. (Os01t0818000-01);Auxin efflux carrier domain containing protein. (Os01t0818000-02)
Coordinates
chr1:+:34834574..34839121
Molecular Weight (calculated)
46638.2 Da
IEP (calculated)
8.026
GRAVY (calculated)
0.643
Length
432 amino acids
Sequence
(BLAST)
001: MMERSLMEAL ATAAQGGTVG TSVFDMLKYA VLPIAKVFTV CFMGFLMASK YVNILQPNGR KLLNGLVFSL LLPCLIFSQL GRAITIEKML QWWYIPVNIV
101: VGAVSGSLIG FVVASIIRPP YPYFKFTVIH IGIGNIGNIP LVLIAALCRD PTNPFGDSDK CNEDGNAYIS FGQWVGAIIV YTYVFKMLAP PPGESFDSAE
201: EDILPIKASG DNVVPEKGKY PTSTRTSTVP ENEPLLSSEG DKNVSTSLGS KIMGIVRSMV KFLKDKQLLQ PPIIASVFAI AIGVVPVLKN FVLTDDAPLF
301: FFTDSCLILG EAMIPCILLA VGGNLVDGPG EGSNRLGVRT TVAIIFARLI LVPLAGVGII VLVDKLGFIP KDDKMFKFVL LLQHSMPTSV LSGAVANLRG
401: CGKESAAILF WVHIFAVFSM AGWIILYLSL LF
Best Arabidopsis Sequence Match ( AT5G01990.1 )
(BLAST)
001: MIARILAALA DSMEMPVAAG GGSVLGTIKI AVMPIAKVFT MCFLGLLMAS KYVNILPPSG RKLLNGLVFS LLLPCLIFSQ LGQAVTLQKM LQWWFIPVNV
101: VLGTISGSII GFIVASIVRP PYPYFKFTII QIGVGNIGNV PLVLLAALCR DTSNPFGDSE KCSIDGTAYI SFGQWVGAII LYTYVYQMFA PPPEGFDAEE
201: ENLALKTLPV DAAPEQVPLL TQNFPKDFSP TQDLLPVQST EPRGRGVSRK GKIAQIFVFL YEKLKLKQIV QPAIVASILA MILGAIPFTK KLIFTNGAPL
301: FFFTDSCMIL GDAMIPCILL ALGGNLINGP GSSKLGFKTT AAIIIGRLVL VPPVGLGIVT VADKLGFLPA DDKMFRFVLL LQHTMPTSVL SGAVANLRGC
401: GRESAAVLFW VHIFAIFSMA GWMVLYINIL F
Arabidopsis Description
PILS6Protein PIN-LIKES 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN2]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.