Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- golgi 3
- plasma membrane 5
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58937 | Canola | cytosol, golgi, plasma membrane | 99.77 | 99.77 |
| CDY03621 | Canola | cytosol, golgi, plasma membrane | 98.84 | 98.84 |
| AT5G01990.1 | Thale cress | golgi, plasma membrane, vacuole | 89.33 | 89.33 |
| Bra030441.1-P | Field mustard | golgi, plasma membrane, plastid | 87.47 | 89.13 |
| VIT_08s0056g00310.t01 | Wine grape | cytosol, golgi, plasma membrane | 71.93 | 76.54 |
| KRH40632 | Soybean | plasma membrane | 72.62 | 75.6 |
| KRH00524 | Soybean | plasma membrane | 72.62 | 75.6 |
| GSMUA_Achr3P09660_001 | Banana | golgi, plasma membrane | 63.57 | 72.11 |
| PGSC0003DMT400071229 | Potato | cytosol, golgi, plasma membrane | 69.61 | 70.75 |
| Solyc10g074790.1.1 | Tomato | plasma membrane | 68.91 | 70.05 |
| GSMUA_Achr9P16830_001 | Banana | plasma membrane | 66.13 | 68.51 |
| TraesCS4B01G172100.1 | Wheat | golgi, plasma membrane, vacuole | 61.95 | 65.28 |
| EES01656 | Sorghum | plasma membrane | 64.73 | 64.43 |
| TraesCS4A01G132600.1 | Wheat | golgi, plasma membrane, vacuole | 59.86 | 64.02 |
| Zm00001d043083_P003 | Maize | plasma membrane | 64.04 | 63.74 |
| TraesCS3B01G373500.1 | Wheat | plasma membrane | 63.81 | 63.66 |
| TraesCS3A01G341400.1 | Wheat | plasma membrane | 63.57 | 63.43 |
| TraesCS3D01G335100.1 | Wheat | plasma membrane | 63.57 | 63.43 |
| Os01t0818000-01 | Rice | plasma membrane | 63.34 | 63.19 |
| HORVU3Hr1G080640.5 | Barley | plasma membrane | 63.11 | 62.96 |
| TraesCS4D01G174100.2 | Wheat | golgi, plasma membrane, vacuole | 61.25 | 62.56 |
| Os05t0481900-01 | Rice | golgi, plasma membrane, plastid | 61.48 | 60.64 |
| HORVU4Hr1G050910.5 | Barley | golgi, plasma membrane, plastid | 62.18 | 56.3 |
| Bra016159.1-P | Field mustard | golgi, plasma membrane | 36.66 | 34.42 |
| Bra031803.1-P | Field mustard | plasma membrane | 26.91 | 30.21 |
| Bra015736.1-P | Field mustard | golgi, plasma membrane, vacuole | 26.91 | 29.82 |
| Bra003716.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 26.68 | 29.64 |
| Bra008264.1-P | Field mustard | golgi, plasma membrane, vacuole | 27.15 | 29.4 |
| Bra025857.1-P | Field mustard | plasma membrane | 26.91 | 28.78 |
| Bra037268.1-P | Field mustard | golgi, plasma membrane | 25.99 | 28.5 |
| Bra002068.1-P | Field mustard | plasma membrane | 25.99 | 28.5 |
| Bra037193.1-P | Field mustard | plasma membrane | 26.68 | 18.85 |
Protein Annotations
| EnsemblPlants:Bra014265.1 | EnsemblPlants:Bra014265.1-P | EnsemblPlantsGene:Bra014265 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:Mem_trans | PANTHER:PTHR31419 | PANTHER:PTHR31419:SF1 |
| PFAM:PF03547 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002545FA8 | UniProt:M4DCP9 | MapMan:11.2.4.2 |
| MapMan:24.2.5.2.2 | : | : | : | : | : |
Description
AT5G01990 (E=1e-185) | auxin efflux carrier family protein
Coordinates
chrA08:-:2096045..2098020
Molecular Weight (calculated)
46662.7 Da
IEP (calculated)
9.476
GRAVY (calculated)
0.700
Length
431 amino acids
Sequence
(BLAST)
(BLAST)
001: MIARILAGFM ESPAVAAAGD SVLGTIKIAV MPIAKVFTMC FLGLLMASKY VNILPPSGRK LLNGLVFSLL LPCLIFSQLG QAVTLQKMLQ WWFIPVNVVL
101: GTISGSLIGL LVATIVRPPY PYFKFTIIQI GVGNIGNVPL VLLAALCRDT SNPFGDSEKC SIDGTAYISF GQWVGAIILY TYVYQMLAPP PEGFDGEHDN
201: LPLKNLPLDS SAPEQVPLLT QNHTKDVSSI QVHLPVQTAE PRARVVDSRK SKITQFFVYL YEKLKLKQII QPAIIASILA MILGAIPFTK KLLFTNGAPL
301: FFFTDSCMIL GDAMIPCILL ALGGNLINGP GSSRLGFKTT AAIIFGRLVL VPPVGLGIVT LADRLGFLPA GDKMFKFVLL LQHTMPTSVL SGAVANLRGC
401: GRESAAVLFW VHIFAIFSMA GWMVLYINIL F
101: GTISGSLIGL LVATIVRPPY PYFKFTIIQI GVGNIGNVPL VLLAALCRDT SNPFGDSEKC SIDGTAYISF GQWVGAIILY TYVYQMLAPP PEGFDGEHDN
201: LPLKNLPLDS SAPEQVPLLT QNHTKDVSSI QVHLPVQTAE PRARVVDSRK SKITQFFVYL YEKLKLKQII QPAIIASILA MILGAIPFTK KLLFTNGAPL
301: FFFTDSCMIL GDAMIPCILL ALGGNLINGP GSSRLGFKTT AAIIFGRLVL VPPVGLGIVT LADRLGFLPA GDKMFKFVLL LQHTMPTSVL SGAVANLRGC
401: GRESAAVLFW VHIFAIFSMA GWMVLYINIL F
001: MIARILAALA DSMEMPVAAG GGSVLGTIKI AVMPIAKVFT MCFLGLLMAS KYVNILPPSG RKLLNGLVFS LLLPCLIFSQ LGQAVTLQKM LQWWFIPVNV
101: VLGTISGSII GFIVASIVRP PYPYFKFTII QIGVGNIGNV PLVLLAALCR DTSNPFGDSE KCSIDGTAYI SFGQWVGAII LYTYVYQMFA PPPEGFDAEE
201: ENLALKTLPV DAAPEQVPLL TQNFPKDFSP TQDLLPVQST EPRGRGVSRK GKIAQIFVFL YEKLKLKQIV QPAIVASILA MILGAIPFTK KLIFTNGAPL
301: FFFTDSCMIL GDAMIPCILL ALGGNLINGP GSSKLGFKTT AAIIIGRLVL VPPVGLGIVT VADKLGFLPA DDKMFRFVLL LQHTMPTSVL SGAVANLRGC
401: GRESAAVLFW VHIFAIFSMA GWMVLYINIL F
101: VLGTISGSII GFIVASIVRP PYPYFKFTII QIGVGNIGNV PLVLLAALCR DTSNPFGDSE KCSIDGTAYI SFGQWVGAII LYTYVYQMFA PPPEGFDAEE
201: ENLALKTLPV DAAPEQVPLL TQNFPKDFSP TQDLLPVQST EPRGRGVSRK GKIAQIFVFL YEKLKLKQIV QPAIVASILA MILGAIPFTK KLIFTNGAPL
301: FFFTDSCMIL GDAMIPCILL ALGGNLINGP GSSKLGFKTT AAIIIGRLVL VPPVGLGIVT VADKLGFLPA DDKMFRFVLL LQHTMPTSVL SGAVANLRGC
401: GRESAAVLFW VHIFAIFSMA GWMVLYINIL F
Arabidopsis Description
PILS6Protein PIN-LIKES 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN2]
SUBAcon: [plasma membrane,golgi,vacuole]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.