Factsheet for TraesCS4D01G174100.2

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

plastid 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	plastid, secretory
iPSORT:	plastid
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G172100.1	Wheat	golgi, plasma membrane, vacuole	94.08	97.07
TraesCS4A01G132600.1	Wheat	golgi, plasma membrane, vacuole	91.23	95.53
HORVU4Hr1G050910.5	Barley	golgi, plasma membrane, plastid	90.52	80.25
GSMUA_Achr3P09660_001	Banana	golgi, plasma membrane	64.22	71.32
GSMUA_Achr9P16830_001	Banana	plasma membrane	66.82	67.79
VIT_08s0056g00310.t01	Wine grape	cytosol, golgi, plasma membrane	61.61	64.2
TraesCS3D01G335100.1	Wheat	plasma membrane	65.17	63.66
Bra030441.1-P	Field mustard	golgi, plasma membrane, plastid	61.85	61.7
CDY03621	Canola	cytosol, golgi, plasma membrane	62.8	61.48
Bra014265.1-P	Field mustard	plasma membrane	62.56	61.25
CDY58937	Canola	cytosol, golgi, plasma membrane	62.56	61.25
CDY70057	Canola	golgi, plasma membrane, plastid	61.37	61.23
CDY01222	Canola	golgi, plasma membrane, plastid	60.9	61.05
KRH40632	Soybean	plasma membrane	59.24	60.39
KRH00524	Soybean	plasma membrane	58.53	59.66
PGSC0003DMT400071229	Potato	cytosol, golgi, plasma membrane	59.72	59.43
Solyc10g074790.1.1	Tomato	plasma membrane	59.72	59.43
AT5G01990.1	Thale cress	golgi, plasma membrane, vacuole	60.66	59.4
TraesCS3D01G530400.1	Wheat	plasma membrane	35.31	33.26
TraesCS5D01G275200.1	Wheat	plasma membrane	22.75	31.07
TraesCS5D01G361500.1	Wheat	plasma membrane	26.54	27.65
TraesCS6D01G404400.1	Wheat	plasma membrane	25.12	24.71
TraesCS4D01G319200.1	Wheat	plasma membrane	23.46	23.97
TraesCS5D01G361600.2	Wheat	mitochondrion, plasma membrane	27.25	22.16

Protein Annotations

EnsemblPlants:TraesCS4D01G174100.2	EnsemblPlantsGene:TraesCS4D01G174100	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	InterPro:Mem_trans	PANTHER:PTHR31419	PANTHER:PTHR31419:SF1	PFAM:PF03547
SEG:seg	TMHMM:TMhelix	MapMan:11.2.4.2	MapMan:24.2.5.2.2	:	:

Description

No Description!

Coordinates

chr4D:-:301791874..301810337

Molecular Weight (calculated)

45365.8 Da

IEP (calculated)

9.308

GRAVY (calculated)

0.643

Length

422 amino acids

Sequence
(BLAST)

001: MEAMVSGGTG ESILTSMKFA VLPIAKVFTL CFMGFLMATR YIGILDANGR KLLNGLVFSL LLPCLIFTQL GRAITVQKLL DWWYIPLNIV LGTVSGSLVG
101: LLVAFIVQPP RPYFKFTVVH IAIGNNGNMP LVLIAALCRD PSNPFGDPEK CKQDGNAYVS FGQWVGAIIL YSYVFQMLAP PPGETFDGSR VEKPPPPALA
201: AAPAPEQVPL LTSRASEQAP KCSKVRCFSF FRSSVVTSSS EALESLHIFV RKFKLKRVFE PPVIASALGI SIGATPSLKH LVLTNHAPLF FFTDACIILG
301: GAMIPCILLA LGGNLVDGPG AGSKKLGLRT TAAIIIGRLV LVPPAGMCMV ALADRLGFIP RGDTMFKFVL LLQHSMPTSV LSGAVANLRG CGEESAAVLF
401: WMYVCAVFSV AGWMVLYIRM LF

Best Arabidopsis Sequence Match ( AT5G01990.1 )
(BLAST)

001: MIARILAALA DSMEMPVAAG GGSVLGTIKI AVMPIAKVFT MCFLGLLMAS KYVNILPPSG RKLLNGLVFS LLLPCLIFSQ LGQAVTLQKM LQWWFIPVNV
101: VLGTISGSII GFIVASIVRP PYPYFKFTII QIGVGNIGNV PLVLLAALCR DTSNPFGDSE KCSIDGTAYI SFGQWVGAII LYTYVYQMFA PPPEGFDAEE
201: ENLALKTLPV DAAPEQVPLL TQNFPKDFSP TQDLLPVQST EPRGRGVSRK GKIAQIFVFL YEKLKLKQIV QPAIVASILA MILGAIPFTK KLIFTNGAPL
301: FFFTDSCMIL GDAMIPCILL ALGGNLINGP GSSKLGFKTT AAIIIGRLVL VPPVGLGIVT VADKLGFLPA DDKMFRFVLL LQHTMPTSVL SGAVANLRGC
401: GRESAAVLFW VHIFAIFSMA GWMVLYINIL F

Arabidopsis Description

PILS6Protein PIN-LIKES 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN2]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.