Factsheet for TraesCS4A01G132600.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	secretory
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G172100.1	Wheat	golgi, plasma membrane, vacuole	96.77	95.35
TraesCS4D01G174100.2	Wheat	golgi, plasma membrane, vacuole	95.53	91.23
HORVU4Hr1G050910.5	Barley	golgi, plasma membrane, plastid	93.05	78.78
GSMUA_Achr3P09660_001	Banana	golgi, plasma membrane	64.27	68.16
GSMUA_Achr9P16830_001	Banana	plasma membrane	67.74	65.62
TraesCS3A01G341400.1	Wheat	plasma membrane	67.0	62.5
VIT_08s0056g00310.t01	Wine grape	cytosol, golgi, plasma membrane	62.53	62.22
Bra030441.1-P	Field mustard	golgi, plasma membrane, plastid	63.52	60.52
Bra014265.1-P	Field mustard	plasma membrane	64.02	59.86
CDY58937	Canola	cytosol, golgi, plasma membrane	64.02	59.86
CDY03621	Canola	cytosol, golgi, plasma membrane	64.02	59.86
CDY01222	Canola	golgi, plasma membrane, plastid	62.53	59.86
CDY70057	Canola	golgi, plasma membrane, plastid	62.78	59.81
KRH40632	Soybean	plasma membrane	60.3	58.7
AT5G01990.1	Thale cress	golgi, plasma membrane, vacuole	62.28	58.24
KRH00524	Soybean	plasma membrane	59.55	57.97
PGSC0003DMT400071229	Potato	cytosol, golgi, plasma membrane	59.8	56.84
Solyc10g074790.1.1	Tomato	plasma membrane	59.8	56.84
TraesCS3A01G525200.1	Wheat	plasma membrane	36.97	33.26
TraesCS5A01G354300.1	Wheat	plasma membrane	27.3	26.44
TraesCS6A01G421200.1	Wheat	plasma membrane	24.07	23.49
TraesCS5A01G267300.1	Wheat	extracellular	13.9	22.67
TraesCS5A01G494900.1	Wheat	golgi, peroxisome, plasma membrane, plastid	23.08	18.06

Protein Annotations

EnsemblPlants:TraesCS4A01G132600.1	EnsemblPlantsGene:TraesCS4A01G132600	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	InterPro:Mem_trans	PANTHER:PTHR31419	PANTHER:PTHR31419:SF1	PFAM:PF03547
SEG:seg	TMHMM:TMhelix	MapMan:11.2.4.2	MapMan:24.2.5.2.2	:	:

Description

No Description!

Coordinates

chr4A:+:178985383..178988886

Molecular Weight (calculated)

43561.8 Da

IEP (calculated)

8.831

GRAVY (calculated)

0.679

Length

403 amino acids

Sequence
(BLAST)

001: MMEMSLMEAM VSGGTGESIL TSMKFAVLPI AKVFTLCFMG FLMATRYIGI LDANGRKLLN GLVFSLLLPC LIFTQLGRAI TVQKVLDWWY IPLNIVVGTV
101: SGSLVGLLVA LIVQPPHPYF KFTVVHIAIG NNGNMPLVLI AALCRDPSNP FGDPEKCKQD GNAYVSFGQW VGAIILYSYV FQMLAPPPGE TFDGSRVENP
201: PPPALAAAPA PEQVRLLTSR ASEQAPKCSK ALEILHIFVE KFKLKRVFQP PVIASALGIS IGATPSLKHL VLTNHAPLFF FTDACIILGG AMIPCILLPS
301: EAISKKLGLR TTAAIIIGRL VLVPPAGMCM VALADRLGFI PRGDTMFKFV LLLQHSMPTS VLSGAVANLR GCGEESAAVL FWMYVCAVFS VAGWMVLYIR
401: MLF

Best Arabidopsis Sequence Match ( AT1G20925.1 )
(BLAST)

001: MSLTQSAKLH IIHQSIGKIT TRLYDTSPFH GDSHCKQRRV KDNCIQFNMN ISNVLKCYSE IESFSINQRI RRSISLFLSI LRSFYSMRMR LLDLFITSSI
101: PVAKILLITG IGFYLALDQV NILNHDARKQ LNNIVFYVFS PSLVASSLSE TITYESMVKM WFMPLNVLLT FIIGSFLGWI VIKITKPPSH LRGIIVGCCA
201: AGNLGNMPLI IIPAICNEKG SPFGDPESCE KFGLGYIALS MAIGAIYIWT YVYNLMRMLA NPAGETAINS TSSTMPLISP KVEVAEQVGT WGKVKQRVCS
301: VAEKINLRTI FAPSTIAALI ALAVGLNPLL RKLLVGNTAP LRVIEDSVSL LGDGAIPVLT LIVGGNLLNG LRGSGINKSV IMGVVVVRYL LLPILGVFIV
401: RGAHYLGLVT SEPLYQFVLL LQYVVPPAMN LGTITQLFGS GESECSVILF WSYALASVSL TVWPTFFMWL VA

Arabidopsis Description

PILS1Protein PIN-LIKES 1 [Source:UniProtKB/Swiss-Prot;Acc:F4HWB6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.