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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, golgi, cytosol

Predictor Summary:
  • nucleus 1
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, golgi, plasma membrane
Any Predictor:cytosol, golgi, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:golgi
PProwler:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra014265.1-P Field mustard plasma membrane 99.77 99.77
CDY03621 Canola cytosol, golgi, plasma membrane 99.07 99.07
AT5G01990.1 Thale cress golgi, plasma membrane, vacuole 89.56 89.56
CDY70057 Canola golgi, plasma membrane, plastid 87.7 89.36
CDY01222 Canola golgi, plasma membrane, plastid 87.24 89.31
VIT_08s0056g00310.t01 Wine grape cytosol, golgi, plasma membrane 71.93 76.54
KRH40632 Soybean plasma membrane 72.62 75.6
KRH00524 Soybean plasma membrane 72.62 75.6
GSMUA_Achr3P09660_001 Banana golgi, plasma membrane 63.57 72.11
PGSC0003DMT400071229 Potato cytosol, golgi, plasma membrane 69.61 70.75
Solyc10g074790.1.1 Tomato plasma membrane 68.91 70.05
GSMUA_Achr9P16830_001 Banana plasma membrane 66.13 68.51
TraesCS4B01G172100.1 Wheat golgi, plasma membrane, vacuole 61.95 65.28
EES01656 Sorghum plasma membrane 64.73 64.43
TraesCS4A01G132600.1 Wheat golgi, plasma membrane, vacuole 59.86 64.02
Zm00001d043083_P003 Maize plasma membrane 64.04 63.74
TraesCS3B01G373500.1 Wheat plasma membrane 63.81 63.66
TraesCS3D01G335100.1 Wheat plasma membrane 63.57 63.43
TraesCS3A01G341400.1 Wheat plasma membrane 63.57 63.43
Os01t0818000-01 Rice plasma membrane 63.34 63.19
HORVU3Hr1G080640.5 Barley plasma membrane 63.11 62.96
TraesCS4D01G174100.2 Wheat golgi, plasma membrane, vacuole 61.25 62.56
Os05t0481900-01 Rice golgi, plasma membrane, plastid 61.48 60.64
HORVU4Hr1G050910.5 Barley golgi, plasma membrane, plastid 62.18 56.3
CDX72776 Canola plasma membrane 36.89 34.95
CDX96302 Canola golgi, plasma membrane 36.66 34.42
CDY29492 Canola plasma membrane 28.31 31.85
CDX87589 Canola golgi, plasma membrane, vacuole 27.38 30.33
CDY20402 Canola endoplasmic reticulum, plasma membrane, vacuole 26.91 29.97
CDY45981 Canola golgi, plasma membrane, vacuole 10.67 29.87
CDX68094 Canola endoplasmic reticulum, plasma membrane, vacuole 26.68 29.64
CDY55102 Canola plasma membrane 27.15 29.62
CDY57767 Canola plasma membrane 27.15 29.62
CDX81425 Canola plasma membrane 26.91 29.52
CDY18579 Canola plasma membrane 26.91 29.44
CDY57768 Canola extracellular, plasma membrane, vacuole 9.05 29.1
CDX85953 Canola endoplasmic reticulum, plasma membrane, vacuole 24.36 28.77
CDY30361 Canola golgi, plasma membrane 25.99 28.5
CDY24342 Canola plasma membrane 25.99 28.5
CDY26812 Canola plasma membrane 25.99 28.5
CDY20805 Canola extracellular, plasma membrane 19.03 26.71
CDY31514 Canola mitochondrion, plasma membrane 28.77 25.94
Protein Annotations
EnsemblPlants:CDY58937EnsemblPlantsGene:GSBRNA2T00025338001GO:A0A078J4N8GO:GO:0005575GO:GO:0006810GO:GO:0008150
GO:GO:0016020GO:GO:0016021GO:GO:0055085InterPro:Mem_transPANTHER:PTHR31419PANTHER:PTHR31419:SF1
PFAM:PF03547ProteinID:CDY58937ProteinID:CDY58937.1SEG:segTMHMM:TMhelixUniParc:UPI0004EDCC68
UniProt:A0A078J4N8MapMan:11.2.4.2MapMan:24.2.5.2.2:::
Description
BnaAnng15560DBnaAnng15560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4N8]
Coordinates
chrLK033713:+:1066..3360
Molecular Weight (calculated)
46720.7 Da
IEP (calculated)
9.327
GRAVY (calculated)
0.693
Length
431 amino acids
Sequence
(BLAST)
001: MIARILADFM ESPAVAAAGD SVLGTIKIAV MPIAKVFTMC FLGLLMASKY VNILPPSGRK LLNGLVFSLL LPCLIFSQLG QAVTLQKMLQ WWFIPVNVVL
101: GTISGSLIGL LVATIVRPPY PYFKFTIIQI GVGNIGNVPL VLLAALCRDT SNPFGDSEKC SIDGTAYISF GQWVGAIILY TYVYQMLAPP PEGFDGEHDN
201: LPLKNLPLDS SAPEQVPLLT QNHTKDVSSI QVHLPVQTAE PRARVVDSRK SKITQFFVYL YEKLKLKQII QPAIIASILA MILGAIPFTK KLLFTNGAPL
301: FFFTDSCMIL GDAMIPCILL ALGGNLINGP GSSRLGFKTT AAIIFGRLVL VPPVGLGIVT LADRLGFLPA GDKMFKFVLL LQHTMPTSVL SGAVANLRGC
401: GRESAAVLFW VHIFAIFSMA GWMVLYINIL F
Best Arabidopsis Sequence Match ( AT5G01990.1 )
(BLAST)
001: MIARILAALA DSMEMPVAAG GGSVLGTIKI AVMPIAKVFT MCFLGLLMAS KYVNILPPSG RKLLNGLVFS LLLPCLIFSQ LGQAVTLQKM LQWWFIPVNV
101: VLGTISGSII GFIVASIVRP PYPYFKFTII QIGVGNIGNV PLVLLAALCR DTSNPFGDSE KCSIDGTAYI SFGQWVGAII LYTYVYQMFA PPPEGFDAEE
201: ENLALKTLPV DAAPEQVPLL TQNFPKDFSP TQDLLPVQST EPRGRGVSRK GKIAQIFVFL YEKLKLKQIV QPAIVASILA MILGAIPFTK KLIFTNGAPL
301: FFFTDSCMIL GDAMIPCILL ALGGNLINGP GSSKLGFKTT AAIIIGRLVL VPPVGLGIVT VADKLGFLPA DDKMFRFVLL LQHTMPTSVL SGAVANLRGC
401: GRESAAVLFW VHIFAIFSMA GWMVLYINIL F
Arabidopsis Description
PILS6Protein PIN-LIKES 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN2]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.