Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- plastid 2
- golgi 3
- plasma membrane 4
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P16830_001 | Banana | plasma membrane | 90.0 | 82.21 |
| VIT_08s0056g00310.t01 | Wine grape | cytosol, golgi, plasma membrane | 72.89 | 68.4 |
| TraesCS4B01G172100.1 | Wheat | golgi, plasma membrane, vacuole | 71.32 | 66.26 |
| PGSC0003DMT400071229 | Potato | cytosol, golgi, plasma membrane | 73.16 | 65.57 |
| EES01656 | Sorghum | plasma membrane | 73.95 | 64.9 |
| Solyc10g074790.1.1 | Tomato | plasma membrane | 72.37 | 64.86 |
| Os01t0818000-01 | Rice | plasma membrane | 73.68 | 64.81 |
| Zm00001d043083_P003 | Maize | plasma membrane | 73.42 | 64.43 |
| TraesCS3B01G373500.1 | Wheat | plasma membrane | 73.16 | 64.35 |
| TraesCS4A01G132600.1 | Wheat | golgi, plasma membrane, vacuole | 68.16 | 64.27 |
| TraesCS4D01G174100.2 | Wheat | golgi, plasma membrane, vacuole | 71.32 | 64.22 |
| TraesCS3D01G335100.1 | Wheat | plasma membrane | 72.89 | 64.12 |
| TraesCS3A01G341400.1 | Wheat | plasma membrane | 72.89 | 64.12 |
| CDY03621 | Canola | cytosol, golgi, plasma membrane | 72.63 | 64.04 |
| KRH40632 | Soybean | plasma membrane | 69.74 | 64.01 |
| HORVU3Hr1G080640.5 | Barley | plasma membrane | 72.63 | 63.89 |
| CDY70057 | Canola | golgi, plasma membrane, plastid | 71.05 | 63.83 |
| Bra030441.1-P | Field mustard | golgi, plasma membrane, plastid | 71.05 | 63.83 |
| Bra014265.1-P | Field mustard | plasma membrane | 72.11 | 63.57 |
| CDY58937 | Canola | cytosol, golgi, plasma membrane | 72.11 | 63.57 |
| KRH00524 | Soybean | plasma membrane | 69.21 | 63.53 |
| CDY01222 | Canola | golgi, plasma membrane, plastid | 70.26 | 63.42 |
| AT5G01990.1 | Thale cress | golgi, plasma membrane, vacuole | 70.79 | 62.41 |
| Os05t0481900-01 | Rice | golgi, plasma membrane, plastid | 71.05 | 61.78 |
| HORVU4Hr1G050910.5 | Barley | golgi, plasma membrane, plastid | 72.11 | 57.56 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 39.74 | 38.52 |
| GSMUA_Achr11P... | Banana | plasma membrane | 39.21 | 33.63 |
| GSMUA_Achr2P03670_001 | Banana | golgi, plasma membrane, vacuole | 30.0 | 28.22 |
| GSMUA_Achr10P... | Banana | golgi, plasma membrane | 30.53 | 28.16 |
| GSMUA_Achr9P21210_001 | Banana | plasma membrane | 29.74 | 26.84 |
| GSMUA_Achr10P... | Banana | golgi, plasma membrane | 27.89 | 25.6 |
| GSMUA_Achr3P03690_001 | Banana | plasma membrane | 28.42 | 25.59 |
| GSMUA_Achr5P15890_001 | Banana | golgi, plasma membrane | 27.89 | 25.0 |
| GSMUA_Achr4P25890_001 | Banana | plasma membrane | 27.11 | 24.24 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P09660_001 | EnsemblPlants:GSMUA_Achr3T09660_001 | EnsemblPlantsGene:GSMUA_Achr3G09660_001 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:Mem_trans | PANTHER:PTHR31419 | PANTHER:PTHR31419:SF1 |
| PFAM:PF03547 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002956552 | UniProt:M0SD83 | MapMan:11.2.4.2 |
| MapMan:24.2.5.2.2 | : | : | : | : | : |
Description
auxin efflux carrier component, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G09660_001]
Coordinates
chr3:+:6978589..6991572
Molecular Weight (calculated)
41068.5 Da
IEP (calculated)
8.792
GRAVY (calculated)
0.698
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MCFLGFLMAS KCVNILPANG RKLLNGLVFS LLLPCLIFSQ LGRAITWQKL LEWWFIPVNI ILATILGSLV GLLVASIVRP PYPYFKFTVI HVGIGNIGNI
101: PLVLIAALCR DKSNPFGDSD KCSQDGNAYI SFGQWVGAII LYTYVFQMLA PPPGETFDGA EEVKLPTKIS VNNSAPDQVP LLTSKDAETT SHESLKQGQL
201: IGHLCHLVEK LKIKQVFQPP IIASILAIVI GAVPALKHFI LTDDAPLFFF TDSCLILGEA MIPCILLALG GNLVDGPGAG SKRLGLRTTA AIIFGRLVLV
301: PPAGLGIVTV ADKLGLFPRG DKMFKFVLLL QHTMPTSVLS GAVASLRGCG KEAASVLFWV HIFAVFSMAG WIILYLRILF
101: PLVLIAALCR DKSNPFGDSD KCSQDGNAYI SFGQWVGAII LYTYVFQMLA PPPGETFDGA EEVKLPTKIS VNNSAPDQVP LLTSKDAETT SHESLKQGQL
201: IGHLCHLVEK LKIKQVFQPP IIASILAIVI GAVPALKHFI LTDDAPLFFF TDSCLILGEA MIPCILLALG GNLVDGPGAG SKRLGLRTTA AIIFGRLVLV
301: PPAGLGIVTV ADKLGLFPRG DKMFKFVLLL QHTMPTSVLS GAVASLRGCG KEAASVLFWV HIFAVFSMAG WIILYLRILF
001: MIARILAALA DSMEMPVAAG GGSVLGTIKI AVMPIAKVFT MCFLGLLMAS KYVNILPPSG RKLLNGLVFS LLLPCLIFSQ LGQAVTLQKM LQWWFIPVNV
101: VLGTISGSII GFIVASIVRP PYPYFKFTII QIGVGNIGNV PLVLLAALCR DTSNPFGDSE KCSIDGTAYI SFGQWVGAII LYTYVYQMFA PPPEGFDAEE
201: ENLALKTLPV DAAPEQVPLL TQNFPKDFSP TQDLLPVQST EPRGRGVSRK GKIAQIFVFL YEKLKLKQIV QPAIVASILA MILGAIPFTK KLIFTNGAPL
301: FFFTDSCMIL GDAMIPCILL ALGGNLINGP GSSKLGFKTT AAIIIGRLVL VPPVGLGIVT VADKLGFLPA DDKMFRFVLL LQHTMPTSVL SGAVANLRGC
401: GRESAAVLFW VHIFAIFSMA GWMVLYINIL F
101: VLGTISGSII GFIVASIVRP PYPYFKFTII QIGVGNIGNV PLVLLAALCR DTSNPFGDSE KCSIDGTAYI SFGQWVGAII LYTYVYQMFA PPPEGFDAEE
201: ENLALKTLPV DAAPEQVPLL TQNFPKDFSP TQDLLPVQST EPRGRGVSRK GKIAQIFVFL YEKLKLKQIV QPAIVASILA MILGAIPFTK KLIFTNGAPL
301: FFFTDSCMIL GDAMIPCILL ALGGNLINGP GSSKLGFKTT AAIIIGRLVL VPPVGLGIVT VADKLGFLPA DDKMFRFVLL LQHTMPTSVL SGAVANLRGC
401: GRESAAVLFW VHIFAIFSMA GWMVLYINIL F
Arabidopsis Description
PILS6Protein PIN-LIKES 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN2]
SUBAcon: [plasma membrane,golgi,vacuole]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.