Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS3D01G335100.1 | Wheat | plasma membrane | 99.54 | 99.54 |
TraesCS3A01G341400.1 | Wheat | plasma membrane | 99.31 | 99.31 |
HORVU3Hr1G080640.5 | Barley | plasma membrane | 98.38 | 98.38 |
Os01t0818000-01 | Rice | plasma membrane | 87.5 | 87.5 |
EES01656 | Sorghum | plasma membrane | 87.04 | 86.84 |
Zm00001d043083_P003 | Maize | plasma membrane | 86.34 | 86.14 |
GSMUA_Achr3P09660_001 | Banana | golgi, plasma membrane | 64.35 | 73.16 |
GSMUA_Achr9P16830_001 | Banana | plasma membrane | 69.21 | 71.88 |
TraesCS4B01G172100.1 | Wheat | golgi, plasma membrane, vacuole | 65.05 | 68.7 |
VIT_08s0056g00310.t01 | Wine grape | cytosol, golgi, plasma membrane | 63.89 | 68.15 |
Solyc10g074790.1.1 | Tomato | plasma membrane | 65.97 | 67.22 |
KRH40632 | Soybean | plasma membrane | 63.89 | 66.67 |
KRH00524 | Soybean | plasma membrane | 63.66 | 66.43 |
PGSC0003DMT400071229 | Potato | cytosol, golgi, plasma membrane | 64.81 | 66.04 |
CDY01222 | Canola | golgi, plasma membrane, plastid | 63.43 | 65.08 |
Bra030441.1-P | Field mustard | golgi, plasma membrane, plastid | 63.19 | 64.54 |
CDY70057 | Canola | golgi, plasma membrane, plastid | 62.96 | 64.3 |
CDY03621 | Canola | cytosol, golgi, plasma membrane | 63.89 | 64.04 |
CDY58937 | Canola | cytosol, golgi, plasma membrane | 63.66 | 63.81 |
Bra014265.1-P | Field mustard | plasma membrane | 63.66 | 63.81 |
AT5G01990.1 | Thale cress | golgi, plasma membrane, vacuole | 62.73 | 62.88 |
TraesCS3B01G592500.1 | Wheat | plasma membrane | 38.43 | 37.05 |
TraesCS5B01G356700.1 | Wheat | plasma membrane | 27.31 | 28.3 |
TraesCS5B01G267800.2 | Wheat | golgi, plasma membrane, vacuole | 21.53 | 24.67 |
TraesCS6B01G466900.1 | Wheat | plasma membrane | 25.0 | 24.55 |
TraesCS4B01G322800.1 | Wheat | plasma membrane | 23.38 | 24.51 |
Protein Annotations
EnsemblPlants:TraesCS3B01G373500.1 | EnsemblPlantsGene:TraesCS3B01G373500 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
GO:GO:0016021 | GO:GO:0055085 | InterPro:Mem_trans | PANTHER:PTHR31419 | PANTHER:PTHR31419:SF1 | PFAM:PF03547 |
SEG:seg | TMHMM:TMhelix | MapMan:11.2.4.2 | MapMan:24.2.5.2.2 | : | : |
Description
No Description!
Coordinates
chr3B:+:586509462..586514038
Molecular Weight (calculated)
46683.3 Da
IEP (calculated)
7.652
GRAVY (calculated)
0.653
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MMERRSLMEA LVTAAQGGST DTSVLSMLKY AVLPIAKVFT VCFMGFLMAT KYVNILQPNG RKLLNGLVFS LLLPCLIFSQ LGSAITLEKL LQWWYIPVNI
101: VVGAVSGSLI GFVVASIIRP PYPYFKFTVI HIGIGNIGNI PLVLIAALCR DPSNPFGDSE KCSQDGNAYI SFGQWVGAII VYTYVFKMLS PPPGETFDGE
201: EEKLPVLASE ENAMPELGKY PTGTHTSTVP EDEPLLALEG NQKGATSLGS KILSCVRCVV KFLKDKQLLQ PPIIASVFAI GIGVVPFLKG LIFTDDAPLF
301: FFTDSCLILG EAMIPCILLA VGGNLVDGPG EGSKRLGVRT TVAIIFARLI LVPIAGVGIV MLVDKLGFIP KDDKMFKFVL LLQHSMPTSV LSGAVANLRG
401: CGKESAAILF WVHIFAVFSM AGWIIFYLTL LF
101: VVGAVSGSLI GFVVASIIRP PYPYFKFTVI HIGIGNIGNI PLVLIAALCR DPSNPFGDSE KCSQDGNAYI SFGQWVGAII VYTYVFKMLS PPPGETFDGE
201: EEKLPVLASE ENAMPELGKY PTGTHTSTVP EDEPLLALEG NQKGATSLGS KILSCVRCVV KFLKDKQLLQ PPIIASVFAI GIGVVPFLKG LIFTDDAPLF
301: FFTDSCLILG EAMIPCILLA VGGNLVDGPG EGSKRLGVRT TVAIIFARLI LVPIAGVGIV MLVDKLGFIP KDDKMFKFVL LLQHSMPTSV LSGAVANLRG
401: CGKESAAILF WVHIFAVFSM AGWIIFYLTL LF
001: MIARILAALA DSMEMPVAAG GGSVLGTIKI AVMPIAKVFT MCFLGLLMAS KYVNILPPSG RKLLNGLVFS LLLPCLIFSQ LGQAVTLQKM LQWWFIPVNV
101: VLGTISGSII GFIVASIVRP PYPYFKFTII QIGVGNIGNV PLVLLAALCR DTSNPFGDSE KCSIDGTAYI SFGQWVGAII LYTYVYQMFA PPPEGFDAEE
201: ENLALKTLPV DAAPEQVPLL TQNFPKDFSP TQDLLPVQST EPRGRGVSRK GKIAQIFVFL YEKLKLKQIV QPAIVASILA MILGAIPFTK KLIFTNGAPL
301: FFFTDSCMIL GDAMIPCILL ALGGNLINGP GSSKLGFKTT AAIIIGRLVL VPPVGLGIVT VADKLGFLPA DDKMFRFVLL LQHTMPTSVL SGAVANLRGC
401: GRESAAVLFW VHIFAIFSMA GWMVLYINIL F
101: VLGTISGSII GFIVASIVRP PYPYFKFTII QIGVGNIGNV PLVLLAALCR DTSNPFGDSE KCSIDGTAYI SFGQWVGAII LYTYVYQMFA PPPEGFDAEE
201: ENLALKTLPV DAAPEQVPLL TQNFPKDFSP TQDLLPVQST EPRGRGVSRK GKIAQIFVFL YEKLKLKQIV QPAIVASILA MILGAIPFTK KLIFTNGAPL
301: FFFTDSCMIL GDAMIPCILL ALGGNLINGP GSSKLGFKTT AAIIIGRLVL VPPVGLGIVT VADKLGFLPA DDKMFRFVLL LQHTMPTSVL SGAVANLRGC
401: GRESAAVLFW VHIFAIFSMA GWMVLYINIL F
Arabidopsis Description
PILS6Protein PIN-LIKES 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN2]
SUBAcon: [plasma membrane,golgi,vacuole]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.