Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 4
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH40632 | Soybean | plasma membrane | 77.53 | 75.85 |
| KRH00524 | Soybean | plasma membrane | 77.53 | 75.85 |
| CDY01222 | Canola | golgi, plasma membrane, plastid | 76.3 | 73.4 |
| GSMUA_Achr3P09660_001 | Banana | golgi, plasma membrane | 68.4 | 72.89 |
| Bra030441.1-P | Field mustard | golgi, plasma membrane, plastid | 76.05 | 72.81 |
| CDY70057 | Canola | golgi, plasma membrane, plastid | 75.56 | 72.34 |
| CDY03621 | Canola | cytosol, golgi, plasma membrane | 76.79 | 72.16 |
| Bra014265.1-P | Field mustard | plasma membrane | 76.54 | 71.93 |
| CDY58937 | Canola | cytosol, golgi, plasma membrane | 76.54 | 71.93 |
| AT5G01990.1 | Thale cress | golgi, plasma membrane, vacuole | 75.8 | 71.23 |
| GSMUA_Achr9P16830_001 | Banana | plasma membrane | 72.1 | 70.19 |
| PGSC0003DMT400071229 | Potato | cytosol, golgi, plasma membrane | 71.11 | 67.92 |
| Solyc10g074790.1.1 | Tomato | plasma membrane | 70.86 | 67.69 |
| Os01t0818000-01 | Rice | plasma membrane | 69.14 | 64.81 |
| EES01656 | Sorghum | plasma membrane | 68.89 | 64.43 |
| TraesCS3A01G341400.1 | Wheat | plasma membrane | 68.4 | 64.12 |
| TraesCS4B01G172100.1 | Wheat | golgi, plasma membrane, vacuole | 64.69 | 64.06 |
| Zm00001d043083_P003 | Maize | plasma membrane | 68.4 | 63.97 |
| TraesCS3B01G373500.1 | Wheat | plasma membrane | 68.15 | 63.89 |
| TraesCS3D01G335100.1 | Wheat | plasma membrane | 68.15 | 63.89 |
| HORVU3Hr1G080640.5 | Barley | plasma membrane | 67.41 | 63.19 |
| TraesCS4A01G132600.1 | Wheat | golgi, plasma membrane, vacuole | 62.22 | 62.53 |
| Os05t0481900-01 | Rice | golgi, plasma membrane, plastid | 66.67 | 61.78 |
| TraesCS4D01G174100.2 | Wheat | golgi, plasma membrane, vacuole | 64.2 | 61.61 |
| HORVU4Hr1G050910.5 | Barley | golgi, plasma membrane, plastid | 64.94 | 55.25 |
| VIT_01s0011g04640.t01 | Wine grape | plasma membrane | 42.72 | 39.68 |
| VIT_14s0006g01970.t01 | Wine grape | golgi, mitochondrion, plasma membrane, plastid | 42.72 | 36.04 |
| VIT_18s0001g00940.t01 | Wine grape | plasma membrane | 31.36 | 33.87 |
| VIT_04s0044g01870.t01 | Wine grape | plasma membrane | 30.62 | 32.63 |
| VIT_18s0001g00260.t01 | Wine grape | plasma membrane | 22.72 | 29.87 |
| VIT_07s0031g02200.t01 | Wine grape | plasma membrane | 29.63 | 28.5 |
| VIT_04s0044g01850.t01 | Wine grape | golgi, plasma membrane, vacuole | 28.64 | 27.75 |
| VIT_04s0044g01860.t01 | Wine grape | golgi, plasma membrane, vacuole | 27.41 | 26.55 |
| VIT_04s0044g01890.t01 | Wine grape | endoplasmic reticulum, extracellular | 8.64 | 26.32 |
| VIT_04s0044g01880.t01 | Wine grape | plastid | 28.64 | 25.27 |
Protein Annotations
| EntrezGene:100246780 | wikigene:100246780 | MapMan:11.2.4.2 | MapMan:24.2.5.2.2 | ProteinID:CCB55944 | ProteinID:CCB55944.1 |
| UniProt:F6HMR9 | EMBL:FN595995 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009733 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | EntrezGene:LOC100246780 | wikigene:LOC100246780 | InterPro:Mem_trans |
| PFAM:PF03547 | PANTHER:PTHR31419 | PANTHER:PTHR31419:SF1 | TIGR:TC52490 | TIGR:TC68983 | TMHMM:TMhelix |
| UniParc:UPI0001983A02 | ArrayExpress:VIT_08s0056g00310 | EnsemblPlantsGene:VIT_08s0056g00310 | EnsemblPlants:VIT_08s0056g00310.t01 | unigene:Vvi.131 | RefSeq:XP_002267734 |
| RefSeq:XP_002267734.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr8:+:443631..451662
Molecular Weight (calculated)
44119.6 Da
IEP (calculated)
8.884
GRAVY (calculated)
0.722
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRFLIENGG ESLLGTIKIA VLPIAKVFTM CFLGFLMASK YVNILPASGR KLLNGLVFSL LLPCLIFSQL GQAVTLQKMI EWWFIPINVI CGTIAGSLIG
101: LVVATIIRPP YPFFKFTVIH VGIGNIGNVP LVLLTALCRD QNNPFGDVDT CTKQGTAYIS FGQWVGAIVL YTYVFQMLAP PPEGTFDLDE QHLPIKGCPK
201: DGSPEQVPLL TQEVLSSDLN ASKQGKIKDF LVYMYDKLKI KQILQPPIIA SILALAIGAI PFLKKLIFTP NAPLFFFTDS LIILGEAMIP CILLALGGNL
301: VDGPGSSKLG LRTTTAIIFG RLVLVPPAGI GIVLLADKLG FLPPDDKMFR FVLLLQHSMP TSVLSGAIAN LRGCGRESAA VLFWVHIFAI FSMAGWIVLY
401: LHILF
101: LVVATIIRPP YPFFKFTVIH VGIGNIGNVP LVLLTALCRD QNNPFGDVDT CTKQGTAYIS FGQWVGAIVL YTYVFQMLAP PPEGTFDLDE QHLPIKGCPK
201: DGSPEQVPLL TQEVLSSDLN ASKQGKIKDF LVYMYDKLKI KQILQPPIIA SILALAIGAI PFLKKLIFTP NAPLFFFTDS LIILGEAMIP CILLALGGNL
301: VDGPGSSKLG LRTTTAIIFG RLVLVPPAGI GIVLLADKLG FLPPDDKMFR FVLLLQHSMP TSVLSGAIAN LRGCGRESAA VLFWVHIFAI FSMAGWIVLY
401: LHILF
001: MIARILAALA DSMEMPVAAG GGSVLGTIKI AVMPIAKVFT MCFLGLLMAS KYVNILPPSG RKLLNGLVFS LLLPCLIFSQ LGQAVTLQKM LQWWFIPVNV
101: VLGTISGSII GFIVASIVRP PYPYFKFTII QIGVGNIGNV PLVLLAALCR DTSNPFGDSE KCSIDGTAYI SFGQWVGAII LYTYVYQMFA PPPEGFDAEE
201: ENLALKTLPV DAAPEQVPLL TQNFPKDFSP TQDLLPVQST EPRGRGVSRK GKIAQIFVFL YEKLKLKQIV QPAIVASILA MILGAIPFTK KLIFTNGAPL
301: FFFTDSCMIL GDAMIPCILL ALGGNLINGP GSSKLGFKTT AAIIIGRLVL VPPVGLGIVT VADKLGFLPA DDKMFRFVLL LQHTMPTSVL SGAVANLRGC
401: GRESAAVLFW VHIFAIFSMA GWMVLYINIL F
101: VLGTISGSII GFIVASIVRP PYPYFKFTII QIGVGNIGNV PLVLLAALCR DTSNPFGDSE KCSIDGTAYI SFGQWVGAII LYTYVYQMFA PPPEGFDAEE
201: ENLALKTLPV DAAPEQVPLL TQNFPKDFSP TQDLLPVQST EPRGRGVSRK GKIAQIFVFL YEKLKLKQIV QPAIVASILA MILGAIPFTK KLIFTNGAPL
301: FFFTDSCMIL GDAMIPCILL ALGGNLINGP GSSKLGFKTT AAIIIGRLVL VPPVGLGIVT VADKLGFLPA DDKMFRFVLL LQHTMPTSVL SGAVANLRGC
401: GRESAAVLFW VHIFAIFSMA GWMVLYINIL F
Arabidopsis Description
PILS6Protein PIN-LIKES 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN2]
SUBAcon: [plasma membrane,golgi,vacuole]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.