Factsheet for VIT_18s0001g00940.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0006g01970.t01	Wine grape	golgi, mitochondrion, plasma membrane, plastid	92.0	71.88
VIT_18s0001g00260.t01	Wine grape	plasma membrane	55.47	67.53
VIT_01s0011g04640.t01	Wine grape	plasma membrane	67.2	57.8
GSMUA_Achr11P...	Banana	plasma membrane	66.67	56.43
GSMUA_AchrUn_...	Banana	plasma membrane	58.93	56.38
TraesCS3A01G525200.1	Wheat	plasma membrane	66.13	55.36
TraesCS3B01G592500.1	Wheat	plasma membrane	66.13	55.36
TraesCS3D01G530400.1	Wheat	plasma membrane	66.13	55.36
Zm00001d051044_P001	Maize	golgi, plasma membrane, vacuole	65.33	54.32
HORVU3Hr1G114270.1	Barley	plasma membrane	65.6	54.3
EES07131	Sorghum	golgi, plasma membrane	65.07	53.98
Os08t0191000-01	Rice	golgi, plasma membrane, plastid	65.33	53.85
Solyc02g091240.1.1	Tomato	golgi, plasma membrane	64.8	53.76
PGSC0003DMT400078752	Potato	plasma membrane	64.8	53.76
HORVU0Hr1G031980.1	Barley	golgi, plasma membrane	65.6	53.25
VIT_08s0056g00310.t01	Wine grape	cytosol, golgi, plasma membrane	33.87	31.36
VIT_07s0031g02200.t01	Wine grape	plasma membrane	24.8	22.09
VIT_04s0044g01870.t01	Wine grape	plasma membrane	21.87	21.58
VIT_04s0044g01850.t01	Wine grape	golgi, plasma membrane, vacuole	23.73	21.29
VIT_04s0044g01890.t01	Wine grape	endoplasmic reticulum, extracellular	7.2	20.3
VIT_04s0044g01860.t01	Wine grape	golgi, plasma membrane, vacuole	22.13	19.86
VIT_04s0044g01880.t01	Wine grape	plastid	24.0	19.61

Protein Annotations

MapMan:11.2.4.2	MapMan:24.2.5.2.2	EMBL:AM432050	ProteinID:CAN75911	ProteinID:CAN75911.1	ProteinID:CCB58972
ProteinID:CCB58972.1	UniProt:F6HWA8	EMBL:FN596265	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31419
PANTHER:PTHR31419:SF2	TMHMM:TMhelix	UniParc:UPI00021099E2	ArrayExpress:VIT_18s0001g00940	EnsemblPlantsGene:VIT_18s0001g00940	EnsemblPlants:VIT_18s0001g00940.t01
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18_random:-:1661147..1662692

Molecular Weight (calculated)

41521.4 Da

IEP (calculated)

5.657

GRAVY (calculated)

0.569

Length

375 amino acids

Sequence
(BLAST)

001: MDSFWDLSDG NVKSGGENWL SAVVPLMKLL SLTVIGLILA HPKLQVMSKA TFRLLSKLVF VLFLLCLIFT QLGQSITGKN FVLWWFIPVN VIISTAVGCI
101: LRYLVAIICQ PPPEFFWFTI IMTAFGNTGN LPLAIVGSIC HSAKNPFGPD CHTSGVFYVS FAQWVAVILV YTLAYHMMEP PLEYYEIVDE GNEVKEVVTA
201: NDLSRPLLVE AKWPGMEDKE SEHCKTPFIA RVFTRISSIS PSTFPDVGLV EEGGPNSPES IRCLVEPKVV RRIRIVAEQT PIQHILQPPT VASLLAIIIG
301: MFPQLKSFVF DYDAPLSFIT DNLSILAGAT IPFVLLILGG MLVEGPYESK LGIRTVIGIS VARLLVLRLE LESFF

Best Arabidopsis Sequence Match ( AT1G71090.1 )
(BLAST)

001: MSGFSSGNVN SRVVDILSGV VPLLKLICLT VIGLLLAHPK TQLVPRATFR LLSKLVFALF LPCLIFTELG ESITLDNIVQ WWFIPVNVLL SAVVGSLIGY
101: LVVLICRPPP EFNRFTIVMT AFGNTGNLLL AIVSSVCHTK TNPFGPNCNS RGVSYVSFAQ WVAVILVYTV VYHMMEPPLE YYEVVEEEGV EIEEINVENH
201: DASRPLLVEA EWPGIEDKET EHCKTPFIAR VFNSISSFSQ TSFPEVDLGG EYGGESSSPR SIQCLAEPRV MRRIRVVAEQ TPVKHILQPP TIASLLAIII
301: GSVPQLKSVV FGYDAPLSFI TDSLNIMGSA MVPSVMLVLG GMLSEGPNES TLGLRTTIGI SVARLLVLPL VGIGIVMSAD KLGLISSADP MFKFVLLLQY
401: STPSAILLGA IASLRGYAVR EASALLFWQH IFALLSLTFY IVIFFKLTVE TTVQGMQ

Arabidopsis Description

PILS2Protein PIN-LIKES 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C999]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.