Factsheet for PGSC0003DMT400078752

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
golgi 3
plasma membrane 5
extracellular 2
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g091240.1.1	Tomato	golgi, plasma membrane	95.35	95.35
GSMUA_AchrUn_...	Banana	plasma membrane	61.06	70.41
GSMUA_Achr11P...	Banana	plasma membrane	68.36	69.75
TraesCS3D01G530400.1	Wheat	plasma membrane	66.15	66.74
TraesCS3B01G592500.1	Wheat	plasma membrane	65.93	66.52
TraesCS3A01G525200.1	Wheat	plasma membrane	65.71	66.29
VIT_14s0006g01970.t01	Wine grape	golgi, mitochondrion, plasma membrane, plastid	69.91	65.83
HORVU3Hr1G114270.1	Barley	plasma membrane	65.27	65.12
Zm00001d051044_P001	Maize	golgi, plasma membrane, vacuole	64.82	64.97
EES07131	Sorghum	golgi, plasma membrane	64.82	64.82
VIT_18s0001g00940.t01	Wine grape	plasma membrane	53.76	64.8
Os08t0191000-01	Rice	golgi, plasma membrane, plastid	65.04	64.62
HORVU0Hr1G031980.1	Barley	golgi, plasma membrane	65.27	63.85
VIT_18s0001g00260.t01	Wine grape	plasma membrane	41.81	61.36
PGSC0003DMT400071229	Potato	cytosol, golgi, plasma membrane	36.95	39.39
PGSC0003DMT400035511	Potato	plasma membrane	26.11	29.14
PGSC0003DMT400048041	Potato	plasma membrane	25.44	29.11
PGSC0003DMT400025706	Potato	endoplasmic reticulum, plasma membrane, vacuole	25.89	28.75
PGSC0003DMT400046054	Potato	plasma membrane	25.0	28.54
PGSC0003DMT400048072	Potato	plasma membrane	24.34	26.51
PGSC0003DMT400075596	Potato	plasma membrane	11.06	24.39

Protein Annotations

EnsemblPlants:PGSC0003DMT400078752	EnsemblPlantsGene:PGSC0003DMG400030639	EntrezGene:102601189	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:Mem_trans	PANTHER:PTHR31419	PANTHER:PTHR31419:SF2
PFAM:PF03547	PGSC:PGSC0003DMG400030639	RefSeq:XP_006357795.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002963903
UniProt:M1D0N4	MapMan:11.2.4.2	MapMan:24.2.5.2.2	:	:	:

Description

Auxin:hydrogen symporter [Source:PGSC_GENE;Acc:PGSC0003DMG400030639]

Coordinates

chr2:-:41723008..41725211

Molecular Weight (calculated)

49975.8 Da

IEP (calculated)

6.504

GRAVY (calculated)

0.558

Length

452 amino acids

Sequence
(BLAST)

001: MEPPSSESQA NVSYNSYYLV YAVLPLLKLL CLTVIGLILA HPRTQLVPKA TFKLLSKLVF ALFLPCTIFI HLGETITVKN FMRWWFIPAN VLLSTAIGCL
101: LGYLVAKICK PPPQYFRFTI IATAFGNTGN LPLAIVGSVC HSSDNPFGPD CYTTGVSYVS FSQWVAVLLV YTLVYHMMEP PIEYFDVVDV GGEIQEQLPS
201: NDLSRPLLVE AEWPGMEDRE TVHCKTPFIA RVFTSVSTLS YSSIPDPDSL EEASAPTSPK SIRCLAEPRV VRKLRIVAEQ TPVRHVLQPP MFAILLAFIV
301: GMVPPIKSVV YGKEAPLEFL TDSLNILAQA MVPSVMLILG GMLAEGPNES ELGVRTTVGI SVARLLVLPL LGTGVVYLAD QLNFLIHDDR MYQFVLLLQY
401: TTPSAILLGA VASLRGYAVR EASALLFWQH VFALFSISIY IIVYFKLLLS YV

Best Arabidopsis Sequence Match ( AT1G71090.1 )
(BLAST)

001: MSGFSSGNVN SRVVDILSGV VPLLKLICLT VIGLLLAHPK TQLVPRATFR LLSKLVFALF LPCLIFTELG ESITLDNIVQ WWFIPVNVLL SAVVGSLIGY
101: LVVLICRPPP EFNRFTIVMT AFGNTGNLLL AIVSSVCHTK TNPFGPNCNS RGVSYVSFAQ WVAVILVYTV VYHMMEPPLE YYEVVEEEGV EIEEINVENH
201: DASRPLLVEA EWPGIEDKET EHCKTPFIAR VFNSISSFSQ TSFPEVDLGG EYGGESSSPR SIQCLAEPRV MRRIRVVAEQ TPVKHILQPP TIASLLAIII
301: GSVPQLKSVV FGYDAPLSFI TDSLNIMGSA MVPSVMLVLG GMLSEGPNES TLGLRTTIGI SVARLLVLPL VGIGIVMSAD KLGLISSADP MFKFVLLLQY
401: STPSAILLGA IASLRGYAVR EASALLFWQH IFALLSLTFY IVIFFKLTVE TTVQGMQ

Arabidopsis Description

PILS2Protein PIN-LIKES 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C999]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.