Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- golgi 3
- plastid 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45981 | Canola | golgi, plasma membrane, vacuole | 38.54 | 51.3 |
| Solyc12g095750.1.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 73.66 | 36.04 |
| PGSC0003DMT400025706 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 58.54 | 29.48 |
| TraesCS5D01G275200.1 | Wheat | plasma membrane | 40.0 | 26.54 |
| GSMUA_Achr3P03690_001 | Banana | plasma membrane | 51.71 | 25.12 |
| CDY20402 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 44.39 | 23.51 |
| CDY29492 | Canola | plasma membrane | 43.9 | 23.5 |
| EER99100 | Sorghum | golgi, plasma membrane, vacuole | 47.32 | 23.43 |
| HORVU5Hr1G073630.3 | Barley | golgi, plasma membrane, vacuole | 46.83 | 23.36 |
| AT1G76520.2 | Thale cress | plasma membrane | 44.39 | 23.33 |
| EER99101 | Sorghum | golgi, plasma membrane, vacuole | 46.83 | 23.19 |
| CDX85953 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 40.98 | 23.01 |
| Bra015736.1-P | Field mustard | golgi, plasma membrane, vacuole | 43.41 | 22.88 |
| Bra008264.1-P | Field mustard | golgi, plasma membrane, vacuole | 44.39 | 22.86 |
| CDX87589 | Canola | golgi, plasma membrane, vacuole | 42.93 | 22.62 |
| CDX68094 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 42.44 | 22.42 |
| Bra003716.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 42.44 | 22.42 |
| AT1G76530.1 | Thale cress | plasma membrane | 44.88 | 22.17 |
| KXG35918 | Sorghum | plasma membrane | 43.9 | 21.74 |
| PGSC0003DMT400046054 | Potato | plasma membrane | 41.95 | 21.72 |
| PGSC0003DMT400035511 | Potato | plasma membrane | 40.98 | 20.74 |
| PGSC0003DMT400048041 | Potato | plasma membrane | 39.02 | 20.25 |
| Os09t0491740-01 | Rice | golgi, plasma membrane, vacuole | 35.61 | 19.26 |
| AT1G20925.1 | Thale cress | plasma membrane | 43.41 | 18.86 |
| CDY31514 | Canola | mitochondrion, plasma membrane | 43.9 | 18.83 |
| Bra025857.1-P | Field mustard | plasma membrane | 36.59 | 18.61 |
| PGSC0003DMT400048072 | Potato | plasma membrane | 37.07 | 18.31 |
| HORVU5Hr1G073670.1 | Barley | cytosol | 46.83 | 17.91 |
| TraesCS5B01G267800.2 | Wheat | golgi, plasma membrane, vacuole | 28.29 | 15.38 |
| PGSC0003DMT400071229 | Potato | cytosol, golgi, plasma membrane | 24.39 | 11.79 |
| PGSC0003DMT400078752 | Potato | plasma membrane | 24.39 | 11.06 |
| TraesCS5A01G267300.1 | Wheat | extracellular | 3.9 | 3.24 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400075596 | EnsemblPlantsGene:PGSC0003DMG400029398 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0055085 | InterPro:Mem_trans | PANTHER:PTHR31651 | PANTHER:PTHR31651:SF6 | PFAM:PF03547 |
| PGSC:PGSC0003DMG400029398 | TMHMM:TMhelix | UniParc:UPI0002963893 | UniProt:M1CVG3 | MapMan:11.2.4.2 | MapMan:24.2.5.2.2 |
Description
Auxin efflux carrier family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029398]
Coordinates
chr12:+:57585894..57590723
Molecular Weight (calculated)
22106.1 Da
IEP (calculated)
9.028
GRAVY (calculated)
0.772
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVLSKKMNL KKLLAPSTCG AIAGFVVGLI PQIRNAVIGD AAPLHVIQDT ALILGDGAVP LLTLIMGGNL LKGLRVSVVP KSILAGIIVV KYIAMPVIGI
101: GVVKGASWLG LVHDDPLYKF VLLLHFALPP AMNIATITQL FGAGESECSV IIVVDLCIGF SSTYTMDSIL HVACIMSTLF LEEKRQTPRV RLYWICYYCL
201: RKNRD
101: GVVKGASWLG LVHDDPLYKF VLLLHFALPP AMNIATITQL FGAGESECSV IIVVDLCIGF SSTYTMDSIL HVACIMSTLF LEEKRQTPRV RLYWICYYCL
201: RKNRD
001: MSLTQSAKLH IIHQSIGKIT TRLYDTSPFH GDSHCKQRRV KDNCIQFNMN ISNVLKCYSE IESFSINQRI RRSISLFLSI LRSFYSMRMR LLDLFITSSI
101: PVAKILLITG IGFYLALDQV NILNHDARKQ LNNIVFYVFS PSLVASSLSE TITYESMVKM WFMPLNVLLT FIIGSFLGWI VIKITKPPSH LRGIIVGCCA
201: AGNLGNMPLI IIPAICNEKG SPFGDPESCE KFGLGYIALS MAIGAIYIWT YVYNLMRMLA NPAGETAINS TSSTMPLISP KVEVAEQVGT WGKVKQRVCS
301: VAEKINLRTI FAPSTIAALI ALAVGLNPLL RKLLVGNTAP LRVIEDSVSL LGDGAIPVLT LIVGGNLLNG LRGSGINKSV IMGVVVVRYL LLPILGVFIV
401: RGAHYLGLVT SEPLYQFVLL LQYVVPPAMN LGTITQLFGS GESECSVILF WSYALASVSL TVWPTFFMWL VA
101: PVAKILLITG IGFYLALDQV NILNHDARKQ LNNIVFYVFS PSLVASSLSE TITYESMVKM WFMPLNVLLT FIIGSFLGWI VIKITKPPSH LRGIIVGCCA
201: AGNLGNMPLI IIPAICNEKG SPFGDPESCE KFGLGYIALS MAIGAIYIWT YVYNLMRMLA NPAGETAINS TSSTMPLISP KVEVAEQVGT WGKVKQRVCS
301: VAEKINLRTI FAPSTIAALI ALAVGLNPLL RKLLVGNTAP LRVIEDSVSL LGDGAIPVLT LIVGGNLLNG LRGSGINKSV IMGVVVVRYL LLPILGVFIV
401: RGAHYLGLVT SEPLYQFVLL LQYVVPPAMN LGTITQLFGS GESECSVILF WSYALASVSL TVWPTFFMWL VA
Arabidopsis Description
PILS1Protein PIN-LIKES 1 [Source:UniProtKB/Swiss-Prot;Acc:F4HWB6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.