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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, endoplasmic reticulum, vacuole

Predictor Summary:
  • extracellular 5
  • golgi 5
  • plasma membrane 6
  • endoplasmic reticulum 6
  • vacuole 6
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY45981 Canola golgi, plasma membrane, vacuole 39.53 99.35
Bra008264.1-P Field mustard golgi, plasma membrane, vacuole 99.74 96.98
CDX87589 Canola golgi, plasma membrane, vacuole 91.21 90.75
AT1G76520.2 Thale cress plasma membrane 87.6 86.92
CDX68094 Canola endoplasmic reticulum, plasma membrane, vacuole 87.08 86.86
CDX85953 Canola endoplasmic reticulum, plasma membrane, vacuole 81.91 86.85
AT1G76530.1 Thale cress plasma membrane 79.33 73.98
CDY29492 Canola plasma membrane 72.61 73.37
CDY31514 Canola mitochondrion, plasma membrane 72.09 58.37
TraesCS5D01G275200.1 Wheat plasma membrane 44.7 55.99
KRH38085 Soybean extracellular 7.24 54.9
PGSC0003DMT400025706 Potato endoplasmic reticulum, plasma membrane, vacuole 57.11 54.3
KRH07852 Soybean golgi, plasma membrane, vacuole 16.02 53.91
Solyc04g082830.2.1 Tomato plasma membrane 54.78 53.54
VIT_04s0044g01890.t01 Wine grape endoplasmic reticulum, extracellular 18.09 52.63
VIT_04s0044g01870.t01 Wine grape plasma membrane 50.65 51.58
KRH76489 Soybean endoplasmic reticulum, plasma membrane, vacuole 54.78 51.08
Solyc12g095750.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 54.78 50.6
KRH28961 Soybean golgi, plasma membrane, vacuole 54.01 50.36
GSMUA_Achr3P03690_001 Banana plasma membrane 53.49 49.05
KRH34529 Soybean golgi, plasma membrane 50.39 48.75
HORVU5Hr1G073630.3 Barley golgi, plasma membrane, vacuole 51.42 48.42
KRH39386 Soybean golgi, plasma membrane, vacuole 51.42 48.07
KRH07859 Soybean golgi, plasma membrane, vacuole 51.42 48.07
EER99100 Sorghum golgi, plasma membrane, vacuole 50.9 47.58
EER99101 Sorghum golgi, plasma membrane, vacuole 50.65 47.34
VIT_04s0044g01860.t01 Wine grape golgi, plasma membrane, vacuole 50.9 47.13
KXG35918 Sorghum plasma membrane 49.61 46.38
VIT_04s0044g01880.t01 Wine grape plastid 54.52 45.97
KRG92281 Soybean plasma membrane 48.58 45.97
Os09t0491740-01 Rice golgi, plasma membrane, vacuole 44.7 45.65
VIT_04s0044g01850.t01 Wine grape golgi, plasma membrane, vacuole 49.1 45.45
TraesCS5B01G267800.2 Wheat golgi, plasma membrane, vacuole 43.67 44.83
KRH66552 Soybean plasma membrane 48.84 44.58
TraesCS5A01G267300.1 Wheat extracellular 28.42 44.53
PGSC0003DMT400075596 Potato plasma membrane 23.51 44.39
KRG92282 Soybean plasma membrane 28.17 42.08
CDY57767 Canola plasma membrane 42.38 41.52
CDY55102 Canola plasma membrane 42.38 41.52
KRH48800 Soybean plasma membrane 44.7 41.39
CDY30361 Canola golgi, plasma membrane 41.86 41.22
CDY24342 Canola plasma membrane 41.86 41.22
CDY26812 Canola plasma membrane 41.86 41.22
CDX81425 Canola plasma membrane 41.34 40.71
CDY18579 Canola plasma membrane 41.34 40.61
CDY20805 Canola extracellular, plasma membrane 31.52 39.74
KRH48798 Soybean plasma membrane 42.89 39.71
KRH34530 Soybean cytosol, endoplasmic reticulum, plasma membrane 30.23 37.38
HORVU5Hr1G073670.1 Barley cytosol 51.42 37.13
KRH07851 Soybean plasma membrane 27.91 36.36
CDY57768 Canola extracellular, plasma membrane, vacuole 12.4 35.82
KRG89678 Soybean plasma membrane 18.09 35.0
CDX72776 Canola plasma membrane 32.82 27.91
CDY01222 Canola golgi, plasma membrane, plastid 30.23 27.79
CDY70057 Canola golgi, plasma membrane, plastid 30.23 27.66
CDX96302 Canola golgi, plasma membrane 32.3 27.23
CDY03621 Canola cytosol, golgi, plasma membrane 30.23 27.15
CDY58937 Canola cytosol, golgi, plasma membrane 29.97 26.91
Zm00001d024842_P002 Maize plasma membrane 18.35 22.98
Protein Annotations
MapMan:11.2.4.2MapMan:24.2.5.2.2GO:A0A078G623UniProt:A0A078G623EnsemblPlants:CDY20402ProteinID:CDY20402
ProteinID:CDY20402.1GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021
GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00012445001InterPro:Mem_transPFAM:PF03547PANTHER:PTHR31651PANTHER:PTHR31651:SF6
TMHMM:TMhelixUniParc:UPI0004EE6715SEG:seg:::
Description
BnaC02g24140DBnaC02g24140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G623]
Coordinates
chrLK032107:-:403470..405886
Molecular Weight (calculated)
42189.0 Da
IEP (calculated)
9.528
GRAVY (calculated)
0.636
Length
387 amino acids
Sequence
(BLAST)
001: MMKLLHLFIT SSKPVVEILL ITTVGFYMAL DGVNLLGQDA RKFLNNIVFY VFSPSLIGSR LANSVTYESL MQMWFMPVNV LLTFIIGSFL GWIVILITKP
101: PSHLRGLIVG CCAAGNLGNM PLIIVPAVCK EKGGPFGDPE NCQKYGVGYV ALSMAMGSIY IWTYVYNLMR VLTNSPIETQ PSIESSCKVP LISSKEEEDN
201: QKVGRWDKVK RRMVSLSGKV NLRTIFAPST IAAMIALVVG LITPIRRLII GNGAPLGVLQ DSVTLVGDGA IPAMTLIIGG NLLKGMRSSG MKKSSIVGVL
301: VARYIFLPIS GVLIVRGAYK FDLITSEPLY QFVLLLQYAV PPAMNLGTIT QLFGAGESEC SVILLWTYAL ASVSLTVWPT FFMWLVA
Best Arabidopsis Sequence Match ( AT1G76520.1 )
(BLAST)
001: MVKLLELFIT SSKPVVEILL ITSVGFYMAL DGVNLLGHDA RKYLNNIVFY VFSPSLIGSR LADSVTYESL VKMWFMPVNV LLTFIIGSLL GWIVIVITKP
101: PSHLRGLILG CCAAGNLGNM PLIIIPAVCK EKGGPFGDPE SCQKYGMGYV ALSMAMGSIY IWTYVYNLMR VLSNSPVETP PSVESNYDSY KVPLISSKEE
201: ENNQKAGRWE KVKRRLVSLS QKVNLKTIFA PSTIAAMIAL VIGLITPLRK LIIGTEAPLR VLQDSVTLVG DGAVPAMTMI IGGNLLKGLR SSGMKMSSII
301: GVLVARYVLL PMSGVLIVRG AYKLDLVTSE PLYQFVLLLQ YAVPPAMNLG TITQLFGTGE SECSVIMLWT YSLASIALTV WPTFFMWLVA
Arabidopsis Description
PILS3Protein PIN-LIKES 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K5]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.