Factsheet for VIT_04s0044g01880.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
golgi 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0044g01870.t01	Wine grape	plasma membrane	58.61	70.79
VIT_04s0044g01890.t01	Wine grape	endoplasmic reticulum, extracellular	19.17	66.17
CDY45981	Canola	golgi, plasma membrane, vacuole	21.57	64.29
TraesCS5D01G275200.1	Wheat	plasma membrane	39.22	58.25
KRH76489	Soybean	endoplasmic reticulum, plasma membrane, vacuole	51.85	57.35
KRH39386	Soybean	golgi, plasma membrane, vacuole	51.63	57.25
GSMUA_Achr3P03690_001	Banana	plasma membrane	52.51	57.11
KRH28961	Soybean	golgi, plasma membrane, vacuole	51.63	57.11
KRH07859	Soybean	golgi, plasma membrane, vacuole	50.54	56.04
AT1G76520.2	Thale cress	plasma membrane	46.62	54.87
CDY29492	Canola	plasma membrane	45.53	54.57
CDY20402	Canola	endoplasmic reticulum, plasma membrane, vacuole	45.97	54.52
Bra015736.1-P	Field mustard	golgi, plasma membrane, vacuole	45.75	53.98
Bra008264.1-P	Field mustard	golgi, plasma membrane, vacuole	46.62	53.77
CDX87589	Canola	golgi, plasma membrane, vacuole	45.32	53.47
VIT_04s0044g01860.t01	Wine grape	golgi, plasma membrane, vacuole	47.93	52.63
CDX68094	Canola	endoplasmic reticulum, plasma membrane, vacuole	44.44	52.58
Bra003716.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	44.44	52.58
HORVU5Hr1G073630.3	Barley	golgi, plasma membrane, vacuole	47.06	52.55
EER99100	Sorghum	golgi, plasma membrane, vacuole	47.28	52.42
EER99101	Sorghum	golgi, plasma membrane, vacuole	46.62	51.69
CDX85953	Canola	endoplasmic reticulum, plasma membrane, vacuole	40.74	51.23
KXG35918	Sorghum	plasma membrane	45.53	50.48
VIT_04s0044g01850.t01	Wine grape	golgi, plasma membrane, vacuole	45.53	50.0
Os09t0491740-01	Rice	golgi, plasma membrane, vacuole	40.3	48.81
TraesCS5B01G267800.2	Wheat	golgi, plasma membrane, vacuole	38.78	47.21
AT1G20925.1	Thale cress	plasma membrane	48.37	47.03
AT1G76530.1	Thale cress	plasma membrane	42.27	46.75
CDY31514	Canola	mitochondrion, plasma membrane	47.71	45.82
TraesCS5A01G267300.1	Wheat	extracellular	24.62	45.75
Bra025857.1-P	Field mustard	plasma membrane	40.09	45.66
HORVU5Hr1G073670.1	Barley	cytosol	48.58	41.6
VIT_07s0031g02200.t01	Wine grape	plasma membrane	37.69	41.09
VIT_08s0056g00310.t01	Wine grape	cytosol, golgi, plasma membrane	25.27	28.64
VIT_18s0001g00260.t01	Wine grape	plasma membrane	18.95	28.25
VIT_01s0011g04640.t01	Wine grape	plasma membrane	25.49	26.83
VIT_14s0006g01970.t01	Wine grape	golgi, mitochondrion, plasma membrane, plastid	27.02	25.83
VIT_18s0001g00940.t01	Wine grape	plasma membrane	19.61	24.0

Protein Annotations

EntrezGene:100260227	wikigene:100260227	MapMan:11.2.4.2	MapMan:24.2.5.2.2	ProteinID:CBI37490	ProteinID:CBI37490.3
UniProt:D7U493	EMBL:FN596506	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	EntrezGene:LOC100260227	wikigene:LOC100260227	InterPro:Mem_trans	PFAM:PF03547
PANTHER:PTHR31651	PANTHER:PTHR31651:SF6	TMHMM:TMhelix	UniParc:UPI0001BE46FC	ArrayExpress:VIT_04s0044g01880	EnsemblPlantsGene:VIT_04s0044g01880
EnsemblPlants:VIT_04s0044g01880.t01	RefSeq:XP_002263495	RefSeq:XP_002263495.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:+:23677511..23685104

Molecular Weight (calculated)

48736.8 Da

IEP (calculated)

8.956

GRAVY (calculated)

0.590

Length

459 amino acids

Sequence
(BLAST)

001: MQCLVKGETA GLIKDQLQSR KSIKRKVSDS PLFFFYSFNG RFQMGLLDLF FVASMPVIKV LLVTAVGSFI ALDRFDIFGE NVRKQLNTIV FFVXXXXXXX
101: XXXXXGGGGG LMWFMPFNIL ITFVIGSALG WLLVKLTRAP QHLRGLVLGC CAAGNLGNLP LIIVPAVCRE KGSPFGAPDV CHTYGMAYAS LSMAIGAIYL
201: WSYVYNIVRV SSVGTTEVIN IEDDSPAKMR EPLLDSKDCS ISVDYADQLT LPYTQSEENL KVTTADKVKR FLRMLSREIN IQALLAPSTT GAILGFIIGM
301: VPQLRKLLIG STAPLRVLQD STSMLGDAAI PALTLIMGGN LLKEYSRDAM VVLFNFSLKG SGIRASLLIG IIVVRYIFLP LLGIAIVKGA VQLGLVNPDP
401: LYQFVLLLQY ALPPAMNIGT ITQLFGAGES ECSVIMLWTY ALASVALTLW STLFMWLVA

Best Arabidopsis Sequence Match ( AT1G76520.1 )
(BLAST)

001: MVKLLELFIT SSKPVVEILL ITSVGFYMAL DGVNLLGHDA RKYLNNIVFY VFSPSLIGSR LADSVTYESL VKMWFMPVNV LLTFIIGSLL GWIVIVITKP
101: PSHLRGLILG CCAAGNLGNM PLIIIPAVCK EKGGPFGDPE SCQKYGMGYV ALSMAMGSIY IWTYVYNLMR VLSNSPVETP PSVESNYDSY KVPLISSKEE
201: ENNQKAGRWE KVKRRLVSLS QKVNLKTIFA PSTIAAMIAL VIGLITPLRK LIIGTEAPLR VLQDSVTLVG DGAVPAMTMI IGGNLLKGLR SSGMKMSSII
301: GVLVARYVLL PMSGVLIVRG AYKLDLVTSE PLYQFVLLLQ YAVPPAMNLG TITQLFGTGE SECSVIMLWT YSLASIALTV WPTFFMWLVA

Arabidopsis Description

PILS3Protein PIN-LIKES 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.