Factsheet for VIT_14s0006g01970.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, golgi, plastid

Predictor Summary:

plastid 3
golgi 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion, plasma membrane, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g00940.t01	Wine grape	plasma membrane	71.88	92.0
VIT_18s0001g00260.t01	Wine grape	plasma membrane	51.46	80.19
GSMUA_AchrUn_...	Banana	plasma membrane	61.04	74.74
VIT_01s0011g04640.t01	Wine grape	plasma membrane	67.71	74.54
GSMUA_Achr11P...	Banana	plasma membrane	67.5	73.14
TraesCS3A01G525200.1	Wheat	plasma membrane	66.67	71.43
TraesCS3B01G592500.1	Wheat	plasma membrane	66.67	71.43
TraesCS3D01G530400.1	Wheat	plasma membrane	66.67	71.43
HORVU3Hr1G114270.1	Barley	plasma membrane	66.46	70.42
Solyc02g091240.1.1	Tomato	golgi, plasma membrane	66.25	70.35
PGSC0003DMT400078752	Potato	plasma membrane	65.83	69.91
EES07131	Sorghum	golgi, plasma membrane	65.83	69.91
Zm00001d051044_P001	Maize	golgi, plasma membrane, vacuole	65.62	69.84
Os08t0191000-01	Rice	golgi, plasma membrane, plastid	65.83	69.45
HORVU0Hr1G031980.1	Barley	golgi, plasma membrane	66.46	69.05
VIT_08s0056g00310.t01	Wine grape	cytosol, golgi, plasma membrane	36.04	42.72
VIT_04s0044g01870.t01	Wine grape	plasma membrane	24.38	30.79
VIT_07s0031g02200.t01	Wine grape	plasma membrane	24.58	28.03
VIT_04s0044g01850.t01	Wine grape	golgi, plasma membrane, vacuole	23.75	27.27
VIT_04s0044g01880.t01	Wine grape	plastid	25.83	27.02
VIT_04s0044g01860.t01	Wine grape	golgi, plasma membrane, vacuole	23.12	26.55
VIT_04s0044g01890.t01	Wine grape	endoplasmic reticulum, extracellular	6.67	24.06

Protein Annotations

EntrezGene:100852994	wikigene:100852994	MapMan:11.2.4.2	MapMan:24.2.5.2.2	EMBL:AM434815	ProteinID:CAN64887
ProteinID:CAN64887.1	ProteinID:CCB57668	ProteinID:CCB57668.1	UniProt:F6HSM7	EMBL:FN596245	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	EntrezGene:LOC100852994
wikigene:LOC100852994	InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31419	PANTHER:PTHR31419:SF2	TMHMM:TMhelix
UniParc:UPI000210805F	ArrayExpress:VIT_14s0006g01970	EnsemblPlantsGene:VIT_14s0006g01970	EnsemblPlants:VIT_14s0006g01970.t01	RefSeq:XP_003633721	RefSeq:XP_003633721.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:+:18806378..18809469

Molecular Weight (calculated)

52807.8 Da

IEP (calculated)

7.548

GRAVY (calculated)

0.618

Length

480 amino acids

Sequence
(BLAST)

001: MTWTNPFHPS LRLRPFLGVP GLSSTEGKKM ESFWDLSDGN VKSGGENWLS AVVPLMKLLS LAVIGLILAH PKLQVMSKAT FRLLSKLVFV LFLPCLIFTH
101: LGQSITGKNF VLWWFIPVNV IISTAVGCIL GYLVAIICRP PPEFFRFTII MTAFGNTGNL PLAIVGSVCH SAKNPFGPDC HTSGVSYVSF AQWVAVILVY
201: TLVYHMMEPP LEYYEIVEEG NEIEEVVTAN DLSRPLLVEA EWPGMEDKET EHCKTPFIAR IFTRISSISP STFPDVGSVE EGGPISPKSI RCLVEPKVVR
301: RIRIVAEQTP IQHILQPPTV ASLLAIIIGM FPQLKSFVFG YDAPLSFITD SLSILAGAAI PFVLLILGGM LAEGPHESKL GIRTVIGISV ARLLVLPLIG
401: IGIILLADKM NFLVPGDKMY RFVLLLQYTT PSAILLGAIA SLRGYAVSEA SALLFWQHVF AVFSLSLYII IYYKVLLPYV

Best Arabidopsis Sequence Match ( AT1G71090.1 )
(BLAST)

001: MSGFSSGNVN SRVVDILSGV VPLLKLICLT VIGLLLAHPK TQLVPRATFR LLSKLVFALF LPCLIFTELG ESITLDNIVQ WWFIPVNVLL SAVVGSLIGY
101: LVVLICRPPP EFNRFTIVMT AFGNTGNLLL AIVSSVCHTK TNPFGPNCNS RGVSYVSFAQ WVAVILVYTV VYHMMEPPLE YYEVVEEEGV EIEEINVENH
201: DASRPLLVEA EWPGIEDKET EHCKTPFIAR VFNSISSFSQ TSFPEVDLGG EYGGESSSPR SIQCLAEPRV MRRIRVVAEQ TPVKHILQPP TIASLLAIII
301: GSVPQLKSVV FGYDAPLSFI TDSLNIMGSA MVPSVMLVLG GMLSEGPNES TLGLRTTIGI SVARLLVLPL VGIGIVMSAD KLGLISSADP MFKFVLLLQY
401: STPSAILLGA IASLRGYAVR EASALLFWQH IFALLSLTFY IVIFFKLTVE TTVQGMQ

Arabidopsis Description

PILS2Protein PIN-LIKES 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C999]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.