Factsheet for VIT_18s0001g00260.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 1
golgi 2
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g00940.t01	Wine grape	plasma membrane	67.53	55.47
VIT_14s0006g01970.t01	Wine grape	golgi, mitochondrion, plasma membrane, plastid	80.19	51.46
VIT_01s0011g04640.t01	Wine grape	plasma membrane	63.64	44.95
GSMUA_Achr11P...	Banana	plasma membrane	62.66	43.57
GSMUA_AchrUn_...	Banana	plasma membrane	54.22	42.6
TraesCS3A01G525200.1	Wheat	plasma membrane	61.36	42.19
PGSC0003DMT400078752	Potato	plasma membrane	61.36	41.81
Solyc02g091240.1.1	Tomato	golgi, plasma membrane	61.36	41.81
TraesCS3B01G592500.1	Wheat	plasma membrane	60.71	41.74
TraesCS3D01G530400.1	Wheat	plasma membrane	60.71	41.74
Zm00001d051044_P001	Maize	golgi, plasma membrane, vacuole	60.39	41.24
Os08t0191000-01	Rice	golgi, plasma membrane, plastid	60.71	41.1
EES07131	Sorghum	golgi, plasma membrane	59.74	40.71
HORVU3Hr1G114270.1	Barley	plasma membrane	59.74	40.62
HORVU0Hr1G031980.1	Barley	golgi, plasma membrane	59.74	39.83
VIT_08s0056g00310.t01	Wine grape	cytosol, golgi, plasma membrane	29.87	22.72
VIT_04s0044g01870.t01	Wine grape	plasma membrane	24.03	19.47
VIT_04s0044g01880.t01	Wine grape	plastid	28.25	18.95
VIT_07s0031g02200.t01	Wine grape	plasma membrane	23.38	17.1
VIT_04s0044g01850.t01	Wine grape	golgi, plasma membrane, vacuole	22.4	16.51
VIT_04s0044g01860.t01	Wine grape	golgi, plasma membrane, vacuole	20.45	15.07
VIT_04s0044g01890.t01	Wine grape	endoplasmic reticulum, extracellular	6.17	14.29

Protein Annotations

ArrayExpress:VIT_18s0001g00260	EMBL:FN595771	EnsemblPlants:VIT_18s0001g00260.t01	EnsemblPlantsGene:VIT_18s0001g00260	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:Mem_trans	PANTHER:PTHR31419
PANTHER:PTHR31419:SF2	PFAM:PF03547	ProteinID:CCB52315	ProteinID:CCB52315.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI00021084E1	UniProt:F6HJB6	MapMan:11.2.4.2	MapMan:24.2.5.2.2	:	:

Description

No Description!

Coordinates

chr18_random:+:1242517..1244120

Molecular Weight (calculated)

33711.3 Da

IEP (calculated)

6.029

GRAVY (calculated)

0.392

Length

308 amino acids

Sequence
(BLAST)

001: MTAFRNTGNL SLAIVGSVCH SAKNPFGLDC HTSGVFYVSF AQWVVVILEY YEIVEEGNKV KEVVTANDLS RLLLVEAEWP GMEDKETKHC KIPFIARVFT
101: RISSISPSTF PDVGSMEEEG PNSLESITCL VEPKVVRRIR IVAEQTPIQH ILQPPIVASL LAIIIGMFPQ LKSFLFDYDA PLSFITDSLS MLAGATIPFV
201: LLILGGMLAE GPYESKLGIQ TVIGISVARL SDQMYGFMLL LQYTTPSAIL LGAIASLRGY AVSEASTLLF WQQVALSEVR NVSSGVSKCV LKLLVHWMNT
301: GRKQSGGF

Best Arabidopsis Sequence Match ( AT1G71090.1 )
(BLAST)

001: MSGFSSGNVN SRVVDILSGV VPLLKLICLT VIGLLLAHPK TQLVPRATFR LLSKLVFALF LPCLIFTELG ESITLDNIVQ WWFIPVNVLL SAVVGSLIGY
101: LVVLICRPPP EFNRFTIVMT AFGNTGNLLL AIVSSVCHTK TNPFGPNCNS RGVSYVSFAQ WVAVILVYTV VYHMMEPPLE YYEVVEEEGV EIEEINVENH
201: DASRPLLVEA EWPGIEDKET EHCKTPFIAR VFNSISSFSQ TSFPEVDLGG EYGGESSSPR SIQCLAEPRV MRRIRVVAEQ TPVKHILQPP TIASLLAIII
301: GSVPQLKSVV FGYDAPLSFI TDSLNIMGSA MVPSVMLVLG GMLSEGPNES TLGLRTTIGI SVARLLVLPL VGIGIVMSAD KLGLISSADP MFKFVLLLQY
401: STPSAILLGA IASLRGYAVR EASALLFWQH IFALLSLTFY IVIFFKLTVE TTVQGMQ

Arabidopsis Description

PILS2Protein PIN-LIKES 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C999]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.