Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 7
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400075596 | Potato | plasma membrane | 36.04 | 73.66 |
| Solyc04g082830.2.1 | Tomato | plasma membrane | 68.26 | 72.22 |
| TraesCS5D01G275200.1 | Wheat | plasma membrane | 43.91 | 59.55 |
| CDY45981 | Canola | golgi, plasma membrane, vacuole | 21.24 | 57.79 |
| GSMUA_Achr3P03690_001 | Banana | plasma membrane | 56.09 | 55.69 |
| CDY20402 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 50.6 | 54.78 |
| CDY29492 | Canola | plasma membrane | 49.88 | 54.57 |
| Bra015736.1-P | Field mustard | golgi, plasma membrane, vacuole | 49.88 | 53.73 |
| CDX87589 | Canola | golgi, plasma membrane, vacuole | 49.64 | 53.47 |
| AT1G76520.2 | Thale cress | plasma membrane | 49.64 | 53.33 |
| HORVU5Hr1G073630.3 | Barley | golgi, plasma membrane, vacuole | 52.27 | 53.28 |
| Bra008264.1-P | Field mustard | golgi, plasma membrane, vacuole | 50.6 | 53.27 |
| CDX68094 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 49.16 | 53.09 |
| Bra003716.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 49.16 | 53.09 |
| Solyc02g037550.2.1 | Tomato | plasma membrane | 49.16 | 52.02 |
| EER99101 | Sorghum | golgi, plasma membrane, vacuole | 50.6 | 51.21 |
| CDX85953 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 44.15 | 50.68 |
| EER99100 | Sorghum | golgi, plasma membrane, vacuole | 49.88 | 50.48 |
| AT1G76530.1 | Thale cress | plasma membrane | 49.4 | 49.88 |
| Os09t0491740-01 | Rice | golgi, plasma membrane, vacuole | 44.15 | 48.81 |
| KXG35918 | Sorghum | plasma membrane | 47.97 | 48.55 |
| TraesCS5A01G267300.1 | Wheat | extracellular | 28.4 | 48.18 |
| TraesCS5B01G267800.2 | Wheat | golgi, plasma membrane, vacuole | 43.2 | 48.01 |
| Bra025857.1-P | Field mustard | plasma membrane | 44.15 | 45.91 |
| AT1G20925.1 | Thale cress | plasma membrane | 50.6 | 44.92 |
| CDY31514 | Canola | mitochondrion, plasma membrane | 50.36 | 44.14 |
| Solyc03g031990.2.1 | Tomato | golgi, plasma membrane, vacuole | 43.68 | 44.1 |
| Solyc02g082450.2.1 | Tomato | nucleus | 40.57 | 41.98 |
| Solyc03g032080.2.1 | Tomato | golgi, plasma membrane | 24.11 | 41.56 |
| HORVU5Hr1G073670.1 | Barley | cytosol | 52.27 | 40.86 |
| Solyc10g074790.1.1 | Tomato | plasma membrane | 27.45 | 27.12 |
| Solyc02g091240.1.1 | Tomato | golgi, plasma membrane | 25.78 | 23.89 |
Protein Annotations
| EnsemblPlants:Solyc12g095750.1.1 | EnsemblPlantsGene:Solyc12g095750.1 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0055085 | InterPro:Mem_trans | PANTHER:PTHR31651 | PANTHER:PTHR31651:SF6 | PFAM:PF03547 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI00027699FD | UniProt:K4DH48 | MapMan:11.2.4.2 | MapMan:24.2.5.2.2 |
Description
No Description!
Coordinates
chr12:+:64885336..64889121
Molecular Weight (calculated)
45366.7 Da
IEP (calculated)
8.709
GRAVY (calculated)
0.620
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLLDLLVAA SMPVIQILLI TALGLVLALD RFAILGEDAR KHLNNIVFYI CNPSLISSNL SKTITYESMK RLWFMPLNIF VTFIVGSILA WIVNQITRPP
101: KHLRGLVIGC CAAGNMGNML LIIVPAVCKE KGSPFGAPDI CHTYGMGYAS LSMAVCAVFL WSYVYNIVRI SSSKSPEEVE EVNNSSISKS VRESSIAALG
201: VSTEPLLQRH DLALSEHQSE QLALPSNRFD DKSQVPLWTK SRQYMGVLSK KMNLKKLLAP STCGAIAGFV VGLIPQIRNS IIGDAAPLHV IQDTALILGD
301: GAVPLLTLIM GGNLLKGLRV TVVPKSILAG IIVVKYIAMP VIGIGVVKGA SWLGLVHDDP LYKFMLLLHF ALPPAMNIAT ITQLFGAGES ECSVIMLWSY
401: ALASAALTLW TAFFMWLVS
101: KHLRGLVIGC CAAGNMGNML LIIVPAVCKE KGSPFGAPDI CHTYGMGYAS LSMAVCAVFL WSYVYNIVRI SSSKSPEEVE EVNNSSISKS VRESSIAALG
201: VSTEPLLQRH DLALSEHQSE QLALPSNRFD DKSQVPLWTK SRQYMGVLSK KMNLKKLLAP STCGAIAGFV VGLIPQIRNS IIGDAAPLHV IQDTALILGD
301: GAVPLLTLIM GGNLLKGLRV TVVPKSILAG IIVVKYIAMP VIGIGVVKGA SWLGLVHDDP LYKFMLLLHF ALPPAMNIAT ITQLFGAGES ECSVIMLWSY
401: ALASAALTLW TAFFMWLVS
001: MSLTQSAKLH IIHQSIGKIT TRLYDTSPFH GDSHCKQRRV KDNCIQFNMN ISNVLKCYSE IESFSINQRI RRSISLFLSI LRSFYSMRMR LLDLFITSSI
101: PVAKILLITG IGFYLALDQV NILNHDARKQ LNNIVFYVFS PSLVASSLSE TITYESMVKM WFMPLNVLLT FIIGSFLGWI VIKITKPPSH LRGIIVGCCA
201: AGNLGNMPLI IIPAICNEKG SPFGDPESCE KFGLGYIALS MAIGAIYIWT YVYNLMRMLA NPAGETAINS TSSTMPLISP KVEVAEQVGT WGKVKQRVCS
301: VAEKINLRTI FAPSTIAALI ALAVGLNPLL RKLLVGNTAP LRVIEDSVSL LGDGAIPVLT LIVGGNLLNG LRGSGINKSV IMGVVVVRYL LLPILGVFIV
401: RGAHYLGLVT SEPLYQFVLL LQYVVPPAMN LGTITQLFGS GESECSVILF WSYALASVSL TVWPTFFMWL VA
101: PVAKILLITG IGFYLALDQV NILNHDARKQ LNNIVFYVFS PSLVASSLSE TITYESMVKM WFMPLNVLLT FIIGSFLGWI VIKITKPPSH LRGIIVGCCA
201: AGNLGNMPLI IIPAICNEKG SPFGDPESCE KFGLGYIALS MAIGAIYIWT YVYNLMRMLA NPAGETAINS TSSTMPLISP KVEVAEQVGT WGKVKQRVCS
301: VAEKINLRTI FAPSTIAALI ALAVGLNPLL RKLLVGNTAP LRVIEDSVSL LGDGAIPVLT LIVGGNLLNG LRGSGINKSV IMGVVVVRYL LLPILGVFIV
401: RGAHYLGLVT SEPLYQFVLL LQYVVPPAMN LGTITQLFGS GESECSVILF WSYALASVSL TVWPTFFMWL VA
Arabidopsis Description
PILS1Protein PIN-LIKES 1 [Source:UniProtKB/Swiss-Prot;Acc:F4HWB6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.