Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 8
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400025706 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 96.21 | 93.61 |
| Solyc12g095750.1.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 72.22 | 68.26 |
| CDY45981 | Canola | golgi, plasma membrane, vacuole | 24.24 | 62.34 |
| CDY29492 | Canola | plasma membrane | 57.07 | 59.01 |
| TraesCS5D01G275200.1 | Wheat | plasma membrane | 45.45 | 58.25 |
| GSMUA_Achr3P03690_001 | Banana | plasma membrane | 61.36 | 57.58 |
| Bra015736.1-P | Field mustard | golgi, plasma membrane, vacuole | 54.29 | 55.27 |
| CDX68094 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 54.04 | 55.15 |
| Bra003716.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 54.04 | 55.15 |
| CDX87589 | Canola | golgi, plasma membrane, vacuole | 54.04 | 55.01 |
| CDY20402 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 53.54 | 54.78 |
| AT1G76520.2 | Thale cress | plasma membrane | 53.79 | 54.62 |
| Solyc02g037550.2.1 | Tomato | plasma membrane | 54.55 | 54.55 |
| Bra008264.1-P | Field mustard | golgi, plasma membrane, vacuole | 53.79 | 53.52 |
| CDX85953 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 48.74 | 52.88 |
| HORVU5Hr1G073630.3 | Barley | golgi, plasma membrane, vacuole | 54.29 | 52.31 |
| EER99100 | Sorghum | golgi, plasma membrane, vacuole | 52.78 | 50.48 |
| EER99101 | Sorghum | golgi, plasma membrane, vacuole | 52.27 | 50.0 |
| KXG35918 | Sorghum | plasma membrane | 51.77 | 49.52 |
| AT1G76530.1 | Thale cress | plasma membrane | 51.77 | 49.4 |
| Os09t0491740-01 | Rice | golgi, plasma membrane, vacuole | 46.97 | 49.08 |
| Bra025857.1-P | Field mustard | plasma membrane | 49.75 | 48.88 |
| CDY31514 | Canola | mitochondrion, plasma membrane | 56.82 | 47.07 |
| AT1G20925.1 | Thale cress | plasma membrane | 56.06 | 47.03 |
| TraesCS5A01G267300.1 | Wheat | extracellular | 29.29 | 46.96 |
| TraesCS5B01G267800.2 | Wheat | golgi, plasma membrane, vacuole | 44.44 | 46.68 |
| Solyc03g031990.2.1 | Tomato | golgi, plasma membrane, vacuole | 48.74 | 46.51 |
| Solyc02g082450.2.1 | Tomato | nucleus | 43.18 | 42.22 |
| HORVU5Hr1G073670.1 | Barley | cytosol | 54.29 | 40.11 |
| Solyc03g032080.2.1 | Tomato | golgi, plasma membrane | 23.99 | 39.09 |
| Solyc10g074790.1.1 | Tomato | plasma membrane | 30.05 | 28.07 |
| Solyc02g091240.1.1 | Tomato | golgi, plasma membrane | 28.28 | 24.78 |
Protein Annotations
| EnsemblPlants:Solyc04g082830.2.1 | EnsemblPlantsGene:Solyc04g082830.2 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0055085 | InterPro:Mem_trans | PANTHER:PTHR31651 | PANTHER:PTHR31651:SF6 | PFAM:PF03547 |
| SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0002766A41 | UniProt:K4BW10 | MapMan:11.2.4.2 |
| MapMan:24.2.5.2.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4:+:66364779..66369267
Molecular Weight (calculated)
42813.7 Da
IEP (calculated)
9.984
GRAVY (calculated)
0.604
Length
396 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVLKVLLIT ALGLILALDR IDLLGQDARK HLNNIVFFVL NPALVSSNLA KTVTYESLKK LWFMPFNILF TFVAGSILGW AVLQVTRPPQ HLRGLVVGCC
101: AAGNLGNMLL IIIPAVCKEK GSPFGDPGVC HTYGMSYASL SMAVGAIYLW SYVYNIVRIS SSRSSKEVEI NDSSTSISSR EGSISTESLL PAKAPPEQLG
201: LPSTRFDHKT QAHLATRLKQ LMENVSRKIN LKRLLAPSTT GAIAGFIVGL VPQMRKLMIG DVAPLRVIEN SAILLGDGAI PLLTLIMGGN LLKGLTGSGI
301: QKSLLLGIIV VRYIALPLIG IVVVKGAIRL GLVQHDPLYQ FVLLLQFALP PAMNIGTITQ LFGAGESECS VIMFWAYALA SISLTLWTTF FMWLVS
101: AAGNLGNMLL IIIPAVCKEK GSPFGDPGVC HTYGMSYASL SMAVGAIYLW SYVYNIVRIS SSRSSKEVEI NDSSTSISSR EGSISTESLL PAKAPPEQLG
201: LPSTRFDHKT QAHLATRLKQ LMENVSRKIN LKRLLAPSTT GAIAGFIVGL VPQMRKLMIG DVAPLRVIEN SAILLGDGAI PLLTLIMGGN LLKGLTGSGI
301: QKSLLLGIIV VRYIALPLIG IVVVKGAIRL GLVQHDPLYQ FVLLLQFALP PAMNIGTITQ LFGAGESECS VIMFWAYALA SISLTLWTTF FMWLVS
001: MSLTQSAKLH IIHQSIGKIT TRLYDTSPFH GDSHCKQRRV KDNCIQFNMN ISNVLKCYSE IESFSINQRI RRSISLFLSI LRSFYSMRMR LLDLFITSSI
101: PVAKILLITG IGFYLALDQV NILNHDARKQ LNNIVFYVFS PSLVASSLSE TITYESMVKM WFMPLNVLLT FIIGSFLGWI VIKITKPPSH LRGIIVGCCA
201: AGNLGNMPLI IIPAICNEKG SPFGDPESCE KFGLGYIALS MAIGAIYIWT YVYNLMRMLA NPAGETAINS TSSTMPLISP KVEVAEQVGT WGKVKQRVCS
301: VAEKINLRTI FAPSTIAALI ALAVGLNPLL RKLLVGNTAP LRVIEDSVSL LGDGAIPVLT LIVGGNLLNG LRGSGINKSV IMGVVVVRYL LLPILGVFIV
401: RGAHYLGLVT SEPLYQFVLL LQYVVPPAMN LGTITQLFGS GESECSVILF WSYALASVSL TVWPTFFMWL VA
101: PVAKILLITG IGFYLALDQV NILNHDARKQ LNNIVFYVFS PSLVASSLSE TITYESMVKM WFMPLNVLLT FIIGSFLGWI VIKITKPPSH LRGIIVGCCA
201: AGNLGNMPLI IIPAICNEKG SPFGDPESCE KFGLGYIALS MAIGAIYIWT YVYNLMRMLA NPAGETAINS TSSTMPLISP KVEVAEQVGT WGKVKQRVCS
301: VAEKINLRTI FAPSTIAALI ALAVGLNPLL RKLLVGNTAP LRVIEDSVSL LGDGAIPVLT LIVGGNLLNG LRGSGINKSV IMGVVVVRYL LLPILGVFIV
401: RGAHYLGLVT SEPLYQFVLL LQYVVPPAMN LGTITQLFGS GESECSVILF WSYALASVSL TVWPTFFMWL VA
Arabidopsis Description
PILS1Protein PIN-LIKES 1 [Source:UniProtKB/Swiss-Prot;Acc:F4HWB6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.