Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- endoplasmic reticulum 3
- plasma membrane 5
- extracellular 2
- vacuole 2
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_10s0003g01830.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G63850.1 | VIT_10s0003g01830.t01 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_18s0001g02020.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 77.26 | 72.77 |
| VIT_07s0031g02340.t01 | Wine grape | peroxisome | 86.98 | 69.98 |
| AT5G63850.1 | Thale cress | plasma membrane | 71.08 | 69.1 |
| CDY31348 | Canola | plasma membrane | 71.08 | 69.1 |
| CDY39844 | Canola | plasma membrane | 71.08 | 69.1 |
| Bra029199.1-P | Field mustard | plasma membrane | 70.86 | 68.88 |
| CDY43761 | Canola | plasma membrane | 69.98 | 68.03 |
| Bra024241.1-P | Field mustard | plasma membrane | 69.76 | 67.81 |
| CDX84450 | Canola | plasma membrane | 69.32 | 67.38 |
| CDX78353 | Canola | plasma membrane | 71.96 | 66.94 |
| AT5G09220.1 | Thale cress | cytosol, peroxisome, plasma membrane | 72.85 | 66.94 |
| Bra006016.1-P | Field mustard | plasma membrane | 71.74 | 66.74 |
| CDX69918 | Canola | plasma membrane | 71.3 | 66.6 |
| CDX81121 | Canola | plasma membrane | 71.52 | 66.53 |
| GSMUA_Achr3P02860_001 | Banana | peroxisome, plasma membrane, vacuole | 65.56 | 66.44 |
| GSMUA_Achr2P20670_001 | Banana | plasma membrane | 64.68 | 66.44 |
| CDY21569 | Canola | plasma membrane | 71.08 | 66.39 |
| GSMUA_Achr10P... | Banana | plasma membrane | 60.93 | 66.19 |
| Bra009371.1-P | Field mustard | plasma membrane | 70.86 | 66.19 |
| TraesCS3A01G406800.1 | Wheat | plasma membrane | 68.21 | 66.17 |
| HORVU3Hr1G091110.1 | Barley | cytosol, vacuole | 17.22 | 66.1 |
| GSMUA_Achr6P12890_001 | Banana | peroxisome, plasma membrane, vacuole | 70.64 | 65.98 |
| GSMUA_AchrUn_... | Banana | cytosol, plasma membrane, vacuole | 60.04 | 65.86 |
| Zm00001d023603_P001 | Maize | plasma membrane | 53.42 | 65.41 |
| GSMUA_Achr1P28270_001 | Banana | peroxisome, plasma membrane, vacuole | 62.91 | 65.07 |
| TraesCS3A01G406900.1 | Wheat | plasma membrane | 68.87 | 65.0 |
| HORVU3Hr1G091120.3 | Barley | plasma membrane | 68.87 | 65.0 |
| TraesCS1D01G264700.1 | Wheat | golgi, peroxisome, vacuole | 70.2 | 64.9 |
| OQU78029 | Sorghum | cytosol, peroxisome, plasma membrane | 69.32 | 64.74 |
| Zm00001d010231_P001 | Maize | plasma membrane | 67.99 | 64.44 |
| TraesCS3D01G402200.1 | Wheat | plasma membrane | 68.43 | 64.32 |
| Zm00001d053143_P002 | Maize | plasma membrane | 66.89 | 64.19 |
| HORVU1Hr1G064970.10 | Barley | golgi, mitochondrion, peroxisome | 69.98 | 64.17 |
| TraesCS3B01G441200.1 | Wheat | plasma membrane | 67.99 | 64.17 |
| TraesCS3B01G441100.1 | Wheat | plasma membrane | 67.99 | 64.17 |
| TraesCS1A01G264500.1 | Wheat | golgi, peroxisome, plasma membrane | 69.32 | 63.95 |
| Os05t0424000-01 | Rice | cytosol, plasma membrane, vacuole | 69.98 | 63.91 |
| TraesCS3A01G407000.1 | Wheat | plasma membrane | 67.55 | 63.75 |
| Os01t0882800-01 | Rice | plasma membrane | 68.65 | 63.73 |
| VIT_07s0031g02440.t01 | Wine grape | plasma membrane | 48.34 | 63.66 |
| EES03989 | Sorghum | plasma membrane | 68.65 | 63.34 |
| VIT_03s0038g02290.t01 | Wine grape | golgi, mitochondrion, peroxisome, plasma membrane | 71.52 | 63.28 |
| Os11t0195600-01 | Rice | cytosol, plasma membrane, vacuole | 66.45 | 63.24 |
| EES08162 | Sorghum | plasma membrane | 67.11 | 63.2 |
| Zm00001d042619_P002 | Maize | plasma membrane | 68.65 | 62.96 |
| GSMUA_Achr8P08250_001 | Banana | cytosol, peroxisome, plasma membrane, plastid | 69.32 | 62.93 |
| HORVU3Hr1G091070.1 | Barley | cytosol | 63.58 | 62.88 |
| TraesCS3D01G402300.1 | Wheat | plasma membrane | 68.21 | 62.68 |
| Zm00001d023593_P001 | Maize | plasma membrane | 65.12 | 61.84 |
| EES16763 | Sorghum | plasma membrane | 65.34 | 61.54 |
| HORVU5Hr1G037660.1 | Barley | plasma membrane | 64.9 | 61.38 |
| TraesCS5D01G125700.1 | Wheat | plasma membrane | 64.68 | 61.17 |
| TraesCS5A01G115100.1 | Wheat | plasma membrane | 64.68 | 61.17 |
| TraesCS5B01G116100.1 | Wheat | plasma membrane | 64.46 | 60.96 |
| EES16761 | Sorghum | plasma membrane | 64.24 | 60.88 |
| HORVU4Hr1G043680.3 | Barley | plasma membrane | 65.56 | 60.86 |
| Os12t0181600-01 | Rice | plasma membrane | 63.8 | 60.84 |
| Os12t0181500-01 | Rice | plasma membrane | 63.8 | 60.84 |
| EES15765 | Sorghum | plasma membrane | 64.24 | 60.75 |
| Zm00001d023592_P001 | Maize | plasma membrane | 64.24 | 60.62 |
| EES16764 | Sorghum | plasma membrane | 64.46 | 60.58 |
| Zm00001d023596_P001 | Maize | cytosol, peroxisome, plasma membrane | 64.24 | 60.37 |
| TraesCS4B01G100800.1 | Wheat | plasma membrane | 64.9 | 60.37 |
| TraesCS4D01G097400.1 | Wheat | plasma membrane | 64.9 | 60.37 |
| TraesCS4A01G215300.1 | Wheat | plasma membrane | 64.68 | 60.29 |
| HORVU3Hr1G091020.2 | Barley | mitochondrion | 69.09 | 58.95 |
| TraesCS3B01G441300.2 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 68.65 | 58.57 |
| GSMUA_Achr8P32600_001 | Banana | plasma membrane | 70.64 | 58.5 |
| EES08159 | Sorghum | cytosol, peroxisome, plasma membrane | 61.81 | 57.61 |
| KXG23123 | Sorghum | mitochondrion, plastid | 63.13 | 56.97 |
| TraesCS1B01G275200.1 | Wheat | mitochondrion | 70.2 | 56.79 |
| Zm00001d004705_P001 | Maize | plasma membrane | 56.51 | 56.39 |
| HORVU2Hr1G084780.1 | Barley | extracellular | 28.48 | 56.33 |
| Zm00001d041842_P002 | Maize | mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 63.13 | 55.75 |
| TraesCS5B01G120000.1 | Wheat | plasma membrane | 57.17 | 54.99 |
| TraesCS5A01G113300.1 | Wheat | cytosol, peroxisome, plasma membrane | 56.95 | 54.43 |
| TraesCS5D01G129000.1 | Wheat | cytosol, peroxisome, plasma membrane | 54.97 | 54.01 |
| KXG23106 | Sorghum | cytosol, peroxisome, plasma membrane | 56.07 | 52.7 |
| Zm00001d050211_P001 | Maize | peroxisome | 51.43 | 51.32 |
| EES13588 | Sorghum | cytosol, peroxisome, plasma membrane | 55.19 | 50.2 |
| TraesCS2B01G367000.1 | Wheat | plasma membrane | 54.53 | 49.9 |
| VIT_18s0001g08270.t01 | Wine grape | plasma membrane | 53.2 | 49.9 |
| HORVU2Hr1G084710.1 | Barley | plasma membrane | 40.84 | 49.6 |
| TraesCS3A01G065600.1 | Wheat | plasma membrane | 50.33 | 49.57 |
| TraesCS7D01G388300.1 | Wheat | plasma membrane | 55.63 | 47.82 |
| VIT_19s0015g01300.t01 | Wine grape | plasma membrane | 47.68 | 47.16 |
| VIT_04s0008g00280.t01 | Wine grape | plasma membrane | 49.01 | 46.35 |
| VIT_19s0015g01290.t01 | Wine grape | plasma membrane | 47.9 | 45.97 |
| TraesCS2D01G346500.1 | Wheat | plasma membrane | 50.55 | 45.62 |
| VIT_04s0008g00240.t01 | Wine grape | plasma membrane | 47.9 | 45.59 |
| VIT_18s0041g01270.t01 | Wine grape | plasma membrane | 44.59 | 44.4 |
| VIT_04s0008g00230.t01 | Wine grape | plasma membrane | 46.14 | 44.0 |
| VIT_18s0041g01240.t01 | Wine grape | plasma membrane | 39.29 | 41.3 |
| VIT_18s0041g01250.t01 | Wine grape | plasma membrane | 39.51 | 40.96 |
| Os12t0195100-00 | Rice | plastid | 43.05 | 39.31 |
| VIT_04s0008g00250.t01 | Wine grape | plasma membrane | 47.68 | 36.61 |
| TraesCS2D01G347000.2 | Wheat | cytosol, plasma membrane, vacuole | 36.87 | 32.24 |
| TraesCS2A01G348600.2 | Wheat | cytosol, plasma membrane, vacuole | 35.98 | 31.71 |
Protein Annotations
| MapMan:24.2.3.4.1 | InterPro:AA_transpt_TM | ProteinID:CCB43975 | ProteinID:CCB43975.1 | UniProt:F6GVJ1 | EMBL:FN594953 |
| GO:GO:0003333 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015171 | GO:GO:0016020 | GO:GO:0016021 | PFAM:PF01490 |
| PANTHER:PTHR22950 | PANTHER:PTHR22950:SF350 | TMHMM:TMhelix | UniParc:UPI000210AC45 | ArrayExpress:VIT_10s0116g01380 | EnsemblPlantsGene:VIT_10s0116g01380 |
| EnsemblPlants:VIT_10s0116g01380.t01 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr10_random:-:728239..730644
Molecular Weight (calculated)
49842.2 Da
IEP (calculated)
8.494
GRAVY (calculated)
0.615
Length
453 amino acids
Sequence
(BLAST)
(BLAST)
001: MCFLIKTPPN ASMVMAASSE LVLLYILIAS PENNSCDWFW SLSLAWAIAQ LGWIAGPAVM FLFSFVIYYT SSLLADCYRS GDPVSGKRNY TYMDAVCGLI
101: QYLNIFGVAI GYTIAASISM MAVKRSNCFH ESGGKNPCHI SSNPYMIMFG IAEIAFSQIP DFDQIWWLSI VVGVMSFTYS SIGLALGVAK VVAAGGFKGS
201: LTGISIGTVT QTQKIWRSFQ ALGDIDFAYS YSIILIEIQS PPSESKTMKK ATSVNIAVTT AFYMLCGCMG YAAFGDLAPG NLLTRFGFYN PFWLLDIANV
301: AVVVHLVGAY QVYCQPLFAF TGKWAAQKWP HSDFSTKEIK IPIPGCSPYS LNLFRLVWRS AFVVATTVIS MLLPSFFNEV VGILGAFGFW PLTVYFPVEL
401: YIVQKKIPKW STRWICLQML SVACLIISIA AAAGSIAGVV LYLKVYHPFK TSY
101: QYLNIFGVAI GYTIAASISM MAVKRSNCFH ESGGKNPCHI SSNPYMIMFG IAEIAFSQIP DFDQIWWLSI VVGVMSFTYS SIGLALGVAK VVAAGGFKGS
201: LTGISIGTVT QTQKIWRSFQ ALGDIDFAYS YSIILIEIQS PPSESKTMKK ATSVNIAVTT AFYMLCGCMG YAAFGDLAPG NLLTRFGFYN PFWLLDIANV
301: AVVVHLVGAY QVYCQPLFAF TGKWAAQKWP HSDFSTKEIK IPIPGCSPYS LNLFRLVWRS AFVVATTVIS MLLPSFFNEV VGILGAFGFW PLTVYFPVEL
401: YIVQKKIPKW STRWICLQML SVACLIISIA AAAGSIAGVV LYLKVYHPFK TSY
001: MGETAAANNH RHHHHHGHQV FDVASHDFVP PQPAFKCFDD DGRLKRTGTV WTASAHIITA VIGSGVLSLA WAIAQLGWIA GPAVMLLFSL VTLYSSTLLS
101: DCYRTGDAVS GKRNYTYMDA VRSILGGFKF KICGLIQYLN LFGIAIGYTI AASISMMAIK RSNCFHKSGG KDPCHMSSNP YMIVFGVAEI LLSQVPDFDQ
201: IWWISIVAAV MSFTYSAIGL ALGIVQVAAN GVFKGSLTGI SIGTVTQTQK IWRTFQALGD IAFAYSYSVV LIEIQDTVRS PPAESKTMKK ATKISIAVTT
301: IFYMLCGSMG YAAFGDAAPG NLLTGFGFYN PFWLLDIANA AIVVHLVGAY QVFAQPIFAF IEKSVAERYP DNDFLSKEFE IRIPGFKSPY KVNVFRMVYR
401: SGFVVTTTVI SMLMPFFNDV VGILGALGFW PLTVYFPVEM YIKQRKVEKW STRWVCLQML SVACLVISVV AGVGSIAGVM LDLKVYKPFK STY
101: DCYRTGDAVS GKRNYTYMDA VRSILGGFKF KICGLIQYLN LFGIAIGYTI AASISMMAIK RSNCFHKSGG KDPCHMSSNP YMIVFGVAEI LLSQVPDFDQ
201: IWWISIVAAV MSFTYSAIGL ALGIVQVAAN GVFKGSLTGI SIGTVTQTQK IWRTFQALGD IAFAYSYSVV LIEIQDTVRS PPAESKTMKK ATKISIAVTT
301: IFYMLCGSMG YAAFGDAAPG NLLTGFGFYN PFWLLDIANA AIVVHLVGAY QVFAQPIFAF IEKSVAERYP DNDFLSKEFE IRIPGFKSPY KVNVFRMVYR
401: SGFVVTTTVI SMLMPFFNDV VGILGALGFW PLTVYFPVEM YIKQRKVEKW STRWVCLQML SVACLVISVV AGVGSIAGVM LDLKVYKPFK STY
Arabidopsis Description
AAP2Amino acid permease 2 [Source:UniProtKB/Swiss-Prot;Acc:Q38967]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.