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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • golgi 2
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, secretory
BaCelLo:nucleus
MultiLoc:golgi
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU7Hr1G088900.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G63850.1 HORVU7Hr1G088900.1 AT4G19030.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5D01G125700.1 Wheat plasma membrane 99.37 99.37
TraesCS5A01G115100.1 Wheat plasma membrane 99.16 99.16
TraesCS5B01G116100.1 Wheat plasma membrane 98.96 98.96
Os12t0181600-01 Rice plasma membrane 88.31 89.05
Os12t0181500-01 Rice plasma membrane 88.31 89.05
EES15765 Sorghum plasma membrane 86.22 86.22
EES16761 Sorghum plasma membrane 85.39 85.56
Zm00001d023593_P001 Maize plasma membrane 84.97 85.33
EES16764 Sorghum plasma membrane 84.97 84.44
Zm00001d023596_P001 Maize cytosol, peroxisome, plasma membrane 84.97 84.44
Zm00001d023592_P001 Maize plasma membrane 84.55 84.38
Zm00001d023603_P001 Maize plasma membrane 65.14 84.32
EES16763 Sorghum plasma membrane 84.55 84.2
HORVU4Hr1G043680.3 Barley plasma membrane 81.21 79.71
KXG23123 Sorghum mitochondrion, plastid 82.67 78.88
Zm00001d041842_P002 Maize mitochondrion, peroxisome, plasma membrane, plastid, vacuole 82.67 77.19
HORVU3Hr1G091110.1 Barley cytosol, vacuole 18.58 75.42
GSMUA_Achr10P... Banana plasma membrane 63.05 72.42
HORVU3Hr1G091120.3 Barley plasma membrane 71.82 71.67
GSMUA_Achr2P20670_001 Banana plasma membrane 64.72 70.29
HORVU1Hr1G064970.10 Barley golgi, mitochondrion, peroxisome 72.44 70.24
GSMUA_Achr3P02860_001 Banana peroxisome, plasma membrane, vacuole 64.93 69.57
GSMUA_Achr6P12890_001 Banana peroxisome, plasma membrane, vacuole 69.94 69.07
Bra015673.1-P Field mustard plasma membrane 68.06 68.49
Solyc06g060110.2.1 Tomato plasma membrane 67.22 68.37
CDX88364 Canola plasma membrane 67.85 68.28
PGSC0003DMT400030727 Potato plasma membrane 67.01 67.86
CDX88365 Canola plasma membrane 67.43 67.86
CDX87522 Canola plasma membrane 67.43 67.86
CDY31348 Canola plasma membrane 65.76 67.6
CDY39844 Canola plasma membrane 65.55 67.38
Bra029199.1-P Field mustard plasma membrane 65.55 67.38
AT1G77380.1 Thale cress plasma membrane 66.81 67.23
AT5G63850.1 Thale cress plasma membrane 65.34 67.17
CDY43761 Canola plasma membrane 65.34 67.17
Bra024241.1-P Field mustard plasma membrane 65.14 66.95
VIT_18s0001g02020.t01 Wine grape cytosol, peroxisome, plasma membrane 66.6 66.32
CDX84450 Canola plasma membrane 64.51 66.31
PGSC0003DMT400015426 Potato plasma membrane 66.18 66.18
CDX69918 Canola plasma membrane 66.39 65.57
Bra009371.1-P Field mustard plasma membrane 66.18 65.36
CDY21569 Canola plasma membrane 66.18 65.36
KRH17988 Soybean plasma membrane 65.14 65.14
KRH16402 Soybean plasma membrane 65.14 65.14
VIT_10s0116g01380.t01 Wine grape plasma membrane 61.38 64.9
HORVU3Hr1G091020.2 Barley mitochondrion 71.82 64.78
Solyc11g005070.1.1 Tomato plasma membrane 64.3 64.71
AT5G09220.1 Thale cress cytosol, peroxisome, plasma membrane 66.39 64.5
CDX78353 Canola plasma membrane 65.55 64.48
HORVU3Hr1G091070.1 Barley cytosol 61.59 64.41
CDX81121 Canola plasma membrane 65.34 64.27
KRH53283 Soybean golgi, peroxisome, plasma membrane 65.34 64.27
Bra006016.1-P Field mustard plasma membrane 65.34 64.27
KRH64623 Soybean cytosol, peroxisome, plasma membrane 64.3 63.24
PGSC0003DMT400043280 Potato plasma membrane 60.75 62.18
CDY71454 Canola golgi, peroxisome, plasma membrane 36.33 62.14
HORVU2Hr1G084780.1 Barley extracellular 29.65 62.01
CDY36017 Canola plasma membrane 62.21 61.95
AT1G44100.1 Thale cress plasma membrane 61.8 61.67
PGSC0003DMT400008650 Potato plasma membrane 59.5 61.42
Bra014020.1-P Field mustard plasma membrane 61.59 61.33
CDY60629 Canola plasma membrane 52.82 60.96
Bra032199.1-P Field mustard plasma membrane 61.8 60.78
CDY43854 Canola plasma membrane 61.8 60.78
CDY47793 Canola plasma membrane 60.33 60.71
HORVU7Hr1G088560.2 Barley golgi, peroxisome, plasma membrane 61.59 60.2
Bra036939.1-P Field mustard plasma membrane 59.71 60.08
CDY14972 Canola plasma membrane 59.71 60.08
VIT_07s0031g02340.t01 Wine grape peroxisome 68.68 58.44
HORVU2Hr1G061190.4 Barley plasma membrane 57.62 56.91
HORVU2Hr1G084710.1 Barley plasma membrane 44.05 56.57
HORVU7Hr1G088510.2 Barley plasma membrane 54.07 56.43
HORVU7Hr1G038330.1 Barley plasma membrane 57.2 55.69
HORVU7Hr1G039670.2 Barley mitochondrion, peroxisome 56.37 52.22
HORVU2Hr1G081790.1 Barley cytosol, peroxisome, plasma membrane 49.48 50.97
HORVU6Hr1G071840.3 Barley endoplasmic reticulum, golgi, plasma membrane 46.14 47.32
HORVU5Hr1G029060.1 Barley cytosol, peroxisome, plasma membrane 46.14 47.32
HORVU3Hr1G081610.2 Barley peroxisome, plasma membrane 49.06 44.76
HORVU2Hr1G111140.3 Barley golgi 44.47 42.94
HORVU6Hr1G071810.8 Barley golgi, peroxisome, plasma membrane 39.87 36.24
Protein Annotations
EMBL:AK360658EMBL:AK370847EnsemblPlants:HORVU5Hr1G037660.1EnsemblPlantsGene:HORVU5Hr1G037660GO:GO:0005575GO:GO:0016020
GO:GO:0016021InterPro:AA_transpt_TMPANTHER:PTHR22950PANTHER:PTHR22950:SF466PFAM:PF01490SEG:seg
TMHMM:TMhelixUniParc:UPI0002005A1EUniProt:F2D9U6MapMan:24.2.3.4.1::
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D9U6]
Coordinates
chrchr5H:+:270952569..270954737
Molecular Weight (calculated)
51506.8 Da
IEP (calculated)
8.380
GRAVY (calculated)
0.539
Length
479 amino acids
Sequence
(BLAST)
001: MAVGNGGAKK VVAPMEVSVE AGNGGDEAWM DDDGRPRRSG TFWTASAHII TAVIGSGVLS LAWAIAQLGW VAGPAVMLLF AAVIYYTSTL LAECYRTGDP
101: ATGKRNYTYM DAVRSNLGGP KVIFCGVIQY ANLVGVAIGY TIASSISMRA IRRADCFHAN GHADPCKSSS NPYMILFGLV QIVFSQIPDF DQIWWLSIVA
201: AVMSFTYSGI GLSLGITQTI SNGGIKGSLT GISIGVGITA TQKVWRSLQA FGDIAFAYSF SNILIEIQDT IRAPPPSEAK VMKQATRLSV ATTTVFYMLC
301: GCMGYAAFGD AAPDNLLTGF GFYEPFWLLD IANVAIVVHL VGAYQVFCQP IFAFVERWAA STWPDSVFIS REFRVGPFAL SVFRLTWRSA FVCLTTVFAM
401: LLPFFGNVVG LLGAVSFWPL TVYFPVEMYI RQRGVPGRST QGICLRMLSV GCLIVSIAAA AGSIANVIEA LKVYKPFSG
Best Arabidopsis Sequence Match ( AT1G44100.1 )
(BLAST)
001: MVVQNVQDLD VLPKHSSDSF DDDGRPKRTG TVWTASAHII TAVIGSGVLS LAWAVAQIGW IGGPVAMLLF SFVTFYTSTL LCSCYRSGDS VTGKRNYTYM
101: DAIHSNLGGI KVKVCGVVQY VNLFGTAIGY TIASAISLVA IQRTSCQQMN GPNDPCHVNG NVYMIAFGIV QIIFSQIPDF DQLWWLSIVA AVMSFAYSAI
201: GLGLGVSKVV ENKEIKGSLT GVTVGTVTLS GTVTSSQKIW RTFQSLGNIA FAYSYSMILI EIQDTVKSPP AEVNTMRKAT FVSVAVTTVF YMLCGCVGYA
301: AFGDNAPGNL LAHGGFRNPY WLLDIANLAI VIHLVGAYQV YCQPLFAFVE KEASRRFPES EFVTKEIKIQ LFPGKPFNLN LFRLVWRTFF VMTTTLISML
401: MPFFNDVVGL LGAIGFWPLT VYFPVEMYIA QKNVPRWGTK WVCLQVLSVT CLFVSVAAAA GSVIGIVSDL KVYKPFQSEF
Arabidopsis Description
AAP5Amino acid permease 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUM3]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.