Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX78905
CDX98596
CDX99411
CDY01565

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G63850.1 CDX78905 AT4G19030.1 21798944
AT5G63850.1 CDX98596 AT4G19030.1 21798944
AT5G63850.1 CDX99411 AT4G19030.1 21798944
AT5G63850.1 CDY01565 AT4G19030.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra024241.1-P Field mustard plasma membrane 99.79 99.79
CDX84450 Canola plasma membrane 98.93 98.93
CDY31348 Canola plasma membrane 94.21 94.21
CDY39844 Canola plasma membrane 94.21 94.21
AT5G63850.1 Thale cress plasma membrane 92.7 92.7
CDX78353 Canola plasma membrane 85.84 82.14
CDX69918 Canola plasma membrane 85.19 81.86
CDX81121 Canola plasma membrane 85.41 81.72
CDY21569 Canola plasma membrane 84.98 81.65
GSMUA_Achr10P... Banana plasma membrane 64.38 71.94
CDX87522 Canola plasma membrane 72.75 71.22
CDX88364 Canola plasma membrane 72.75 71.22
GSMUA_Achr3P02860_001 Banana peroxisome, plasma membrane, vacuole 68.03 70.92
CDX88365 Canola plasma membrane 72.32 70.8
GSMUA_Achr2P20670_001 Banana plasma membrane 66.31 70.07
VIT_10s0116g01380.t01 Wine grape plasma membrane 68.03 69.98
GSMUA_Achr6P12890_001 Banana peroxisome, plasma membrane, vacuole 71.67 68.87
GSMUA_AchrUn_... Banana cytosol, plasma membrane, vacuole 60.94 68.77
TraesCS3A01G406800.1 Wheat plasma membrane 68.88 68.74
OQU78029 Sorghum cytosol, peroxisome, plasma membrane 69.74 67.01
Zm00001d010231_P001 Maize plasma membrane 68.45 66.74
TraesCS3A01G406900.1 Wheat plasma membrane 68.67 66.67
EES03989 Sorghum plasma membrane 70.17 66.6
Os11t0195600-01 Rice cytosol, plasma membrane, vacuole 68.03 66.6
HORVU3Hr1G091120.3 Barley plasma membrane 68.45 66.46
Zm00001d023593_P001 Maize plasma membrane 68.03 66.46
Os01t0882800-01 Rice plasma membrane 69.53 66.39
TraesCS3D01G402200.1 Wheat plasma membrane 68.67 66.39
Zm00001d053143_P002 Maize plasma membrane 67.17 66.31
GSMUA_Achr1P28270_001 Banana peroxisome, plasma membrane, vacuole 62.23 66.21
EES16764 Sorghum plasma membrane 68.45 66.18
Zm00001d023596_P001 Maize cytosol, peroxisome, plasma membrane 68.45 66.18
EES15765 Sorghum plasma membrane 68.03 66.18
TraesCS3B01G441100.1 Wheat plasma membrane 68.03 66.04
TraesCS3B01G441200.1 Wheat plasma membrane 68.03 66.04
TraesCS3A01G407000.1 Wheat plasma membrane 67.81 65.83
Zm00001d023592_P001 Maize plasma membrane 67.81 65.83
TraesCS5B01G116100.1 Wheat plasma membrane 67.6 65.76
EES16763 Sorghum plasma membrane 67.81 65.7
TraesCS5A01G115100.1 Wheat plasma membrane 67.38 65.55
TraesCS5D01G125700.1 Wheat plasma membrane 67.38 65.55
EES16761 Sorghum plasma membrane 67.17 65.48
Zm00001d042619_P002 Maize plasma membrane 69.31 65.38
HORVU5Hr1G037660.1 Barley plasma membrane 67.17 65.34
Zm00001d023603_P001 Maize plasma membrane 51.72 65.14
TraesCS1D01G264700.1 Wheat golgi, peroxisome, vacuole 68.45 65.1
Os12t0181500-01 Rice plasma membrane 66.31 65.05
TraesCS1A01G264500.1 Wheat golgi, peroxisome, plasma membrane 68.45 64.97
TraesCS4B01G100800.1 Wheat plasma membrane 67.81 64.89
EES08162 Sorghum plasma membrane 66.95 64.86
Os12t0181600-01 Rice plasma membrane 66.09 64.84
TraesCS4A01G215300.1 Wheat plasma membrane 67.6 64.81
HORVU1Hr1G064970.10 Barley golgi, mitochondrion, peroxisome 68.67 64.78
HORVU4Hr1G043680.3 Barley plasma membrane 67.81 64.75
TraesCS4D01G097400.1 Wheat plasma membrane 67.6 64.68
TraesCS3D01G402300.1 Wheat plasma membrane 68.24 64.5
Os05t0424000-01 Rice cytosol, plasma membrane, vacuole 68.24 64.11
GSMUA_Achr8P08250_001 Banana cytosol, peroxisome, plasma membrane, plastid 68.45 63.93
CDY60629 Canola plasma membrane 56.87 63.86
CDY43854 Canola plasma membrane 65.67 62.83
CDY36017 Canola plasma membrane 64.81 62.79
HORVU3Hr1G091110.1 Barley cytosol, vacuole 15.88 62.71
CDY47793 Canola plasma membrane 63.3 61.97
KXG23123 Sorghum mitochondrion, plastid 66.74 61.95
VIT_07s0031g02340.t01 Wine grape peroxisome 74.68 61.81
CDY14972 Canola plasma membrane 62.88 61.55
Zm00001d004705_P001 Maize plasma membrane 59.87 61.45
EES08159 Sorghum cytosol, peroxisome, plasma membrane 63.73 61.11
TraesCS5B01G120000.1 Wheat plasma membrane 61.59 60.93
TraesCS5A01G113300.1 Wheat cytosol, peroxisome, plasma membrane 61.8 60.76
HORVU3Hr1G091070.1 Barley cytosol 59.66 60.7
TraesCS3B01G441300.2 Wheat cytosol, peroxisome, plasma membrane, plastid 69.1 60.64
Zm00001d041842_P002 Maize mitochondrion, peroxisome, plasma membrane, plastid, vacuole 66.52 60.43
HORVU3Hr1G091020.2 Barley mitochondrion 68.67 60.26
TraesCS5D01G129000.1 Wheat cytosol, peroxisome, plasma membrane 59.01 59.65
CDY71454 Canola golgi, peroxisome, plasma membrane 35.62 59.29
GSMUA_Achr8P32600_001 Banana plasma membrane 69.1 58.87
TraesCS1B01G275200.1 Wheat mitochondrion 68.45 56.96
KXG23106 Sorghum cytosol, peroxisome, plasma membrane 58.8 56.85
Zm00001d050211_P001 Maize peroxisome 54.94 56.39
HORVU2Hr1G084780.1 Barley extracellular 27.47 55.9
EES13588 Sorghum cytosol, peroxisome, plasma membrane 57.94 54.22
CDY46779 Canola plasma membrane 55.58 54.07
TraesCS2B01G367000.1 Wheat plasma membrane 57.08 53.74
CDY57931 Canola plasma membrane 53.43 53.43
CDY04349 Canola cytosol, peroxisome, plasma membrane 55.36 53.31
CDY63746 Canola extracellular, plasma membrane 40.56 53.09
CDY48843 Canola cytosol, peroxisome, plasma membrane 54.08 52.61
CDY53793 Canola cytosol, peroxisome, plasma membrane 54.08 52.61
TraesCS3A01G065600.1 Wheat plasma membrane 51.93 52.61
CDY22609 Canola plasma membrane 54.29 52.6
CDY49542 Canola plasma membrane 23.18 52.43
CDY53831 Canola plasma membrane 54.08 52.39
CDY57932 Canola plasma membrane 51.5 51.95
CDY62728 Canola plasma membrane 53.0 51.24
CDY44564 Canola cytosol, peroxisome, plasma membrane 55.36 50.89
TraesCS7D01G388300.1 Wheat plasma membrane 57.51 50.85
CDY60248 Canola cytosol, peroxisome, plasma membrane 55.15 50.69
HORVU2Hr1G084710.1 Barley plasma membrane 40.13 50.13
CDY22607 Canola plasma membrane 51.72 50.1
TraesCS2D01G346500.1 Wheat plasma membrane 53.86 50.0
CDY62727 Canola cytosol, peroxisome, plasma membrane 50.21 49.89
CDY22608 Canola plasma membrane 52.15 48.21
CDY04448 Canola peroxisome 54.51 47.04
CDY16869 Canola plasma membrane 46.78 46.38
CDX87155 Canola plasma membrane 34.98 46.31
Os12t0195100-00 Rice plastid 43.56 40.93
TraesCS2D01G347000.2 Wheat cytosol, plasma membrane, vacuole 39.7 35.71
TraesCS2A01G348600.2 Wheat cytosol, plasma membrane, vacuole 39.27 35.6
CDY53832 Canola plasma membrane 51.72 22.87
Protein Annotations
EnsemblPlants:CDY43761EnsemblPlantsGene:GSBRNA2T00077258001GO:A0A078I1S4GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:AA_transpt_TMPANTHER:PTHR22950PANTHER:PTHR22950:SF474PFAM:PF01490ProteinID:CDY43761ProteinID:CDY43761.1
SEG:segTMHMM:TMhelixUniParc:UPI0004EDFA1DUniProt:A0A078I1S4MapMan:24.2.3.4.1:
Description
BnaA06g22970DBnaA06g22970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1S4]
Coordinates
chrLK032568:+:16520..18960
Molecular Weight (calculated)
51336.1 Da
IEP (calculated)
9.025
GRAVY (calculated)
0.488
Length
466 amino acids
Sequence
(BLAST)
001: MDVPRPAFKC FDDDGRPKRS GTVWTASAHI LTAVIGSGVL SLAWAIAQLG WIAGPAVMFL FSFVTYYSTT LLSDCYRTGD PVSGKRNYTY MDAVQSILGG
101: FRFKICGLMQ FLNLFGTTIG YTIASSISMM AIKRSNCFHE SGGKNPCHMS SNPYMIMFGV TEILLSTIKD FDQIWWLSTV AAIMSFTYSS IGLALGIIQV
201: AANGVFKGSL TGISIGAVTQ TQKIWRTFQA LGDIAFAYSY SVVLIEIQDT VRSPPAESKT MKNATRISIA VTTTFYMLCG CMGYAAFGDA APGNLLTGFG
301: FYNPFWLLDV ANAAIVVHLV GAYQVFAQPI FAFVEKQAAA RFPDSDLVSK EFEIRFPGVR SPYKVNVFRT VFRSCFVVLT TVISMLMPFF NDVVGILGAL
401: AFWPLTVYFP VEMYIKQRKV ERWSMKWVCL QMLSCGCLVV TVVAGVGSVV GVMLDLKVYK PFKTTY
Best Arabidopsis Sequence Match ( AT5G63850.1 )
(BLAST)
001: MDVPRPAFKC FDDDGRLKRS GTVWTASAHI ITAVIGSGVL SLAWAIGQLG WIAGPTVMLL FSFVTYYSST LLSDCYRTGD PVSGKRNYTY MDAVRSILGG
101: FRFKICGLIQ YLNLFGITVG YTIAASISMM AIKRSNCFHE SGGKNPCHMS SNPYMIMFGV TEILLSQIKD FDQIWWLSIV AAIMSFTYSA IGLALGIIQV
201: AANGVVKGSL TGISIGAVTQ TQKIWRTFQA LGDIAFAYSY SVVLIEIQDT VRSPPAESKT MKIATRISIA VTTTFYMLCG CMGYAAFGDK APGNLLTGFG
301: FYNPFWLLDV ANAAIVIHLV GAYQVFAQPI FAFIEKQAAA RFPDSDLVTK EYEIRIPGFR SPYKVNVFRA VYRSGFVVLT TVISMLMPFF NDVVGILGAL
401: GFWPLTVYFP VEMYIRQRKV ERWSMKWVCL QMLSCGCLMI TLVAGVGSIA GVMLDLKVYK PFKTTY
Arabidopsis Description
AAP4AAP4 [Source:UniProtKB/TrEMBL;Acc:A0A178UDW1]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.